acnr: Annotated Copy-Number Regions

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This data package contains SNP array data from different types of copy-number regions. These regions were identified manually by the authors of the package and may be used to generate realistic data sets with known truth.

Author
Morgane Pierre-Jean and Pierre Neuvial
Date of publication
2016-05-09 14:00:00
Maintainer
Morgane Pierre-Jean <morgane.pierrejean@genopole.cnrs.fr>
License
LGPL (>= 2.1)
Version
0.2.5

View on R-Forge

Man pages

acnr-package
Annotated Copy-Number Regions
loadCnRegionData
loadCnRegionData

Files in this package

acnr/DESCRIPTION
acnr/NAMESPACE
acnr/NEWS
acnr/R
acnr/R/loadCnRegionData.R
acnr/build
acnr/build/vignette.rds
acnr/inst
acnr/inst/doc
acnr/inst/doc/acnr.R
acnr/inst/doc/acnr.Rnw
acnr/inst/doc/acnr.pdf
acnr/inst/extdata
acnr/inst/extdata/GSE11976
acnr/inst/extdata/GSE11976/HumanCNV370v1
acnr/inst/extdata/GSE11976/HumanCNV370v1/CRL2324,BAF,0,cnRegions.rds
acnr/inst/extdata/GSE11976/HumanCNV370v1/CRL2324,BAF,100,cnRegions.rds
acnr/inst/extdata/GSE11976/HumanCNV370v1/CRL2324,BAF,34,cnRegions.rds
acnr/inst/extdata/GSE11976/HumanCNV370v1/CRL2324,BAF,50,cnRegions.rds
acnr/inst/extdata/GSE11976/HumanCNV370v1/CRL2324,BAF,79,cnRegions.rds
acnr/inst/extdata/GSE13372
acnr/inst/extdata/GSE13372/GenomeWideSNP_6
acnr/inst/extdata/GSE13372/GenomeWideSNP_6/GSE13372,ASCRMAv2,HCC1143_GLEYSvsHCC1143BL_GLEYS,0,cnRegions.rds
acnr/inst/extdata/GSE13372/GenomeWideSNP_6/GSE13372,ASCRMAv2,HCC1143_GLEYSvsHCC1143BL_GLEYS,100,cnRegions.rds
acnr/inst/extdata/GSE29172
acnr/inst/extdata/GSE29172/GenomeWideSNP_6
acnr/inst/extdata/GSE29172/GenomeWideSNP_6/GSE29172,ASCRMAv2,H1395vsBL1395,100,cnRegions.rds
acnr/inst/extdata/GSE29172/GenomeWideSNP_6/GSE29172,ASCRMAv2,H1395vsBL1395,30,cnRegions.rds
acnr/inst/extdata/GSE29172/GenomeWideSNP_6/GSE29172,ASCRMAv2,H1395vsBL1395,50,cnRegions.rds
acnr/inst/extdata/GSE29172/GenomeWideSNP_6/GSE29172,ASCRMAv2,H1395vsBL1395,70,cnRegions.rds
acnr/inst/preprocessing
acnr/inst/preprocessing/GSE11976
acnr/inst/preprocessing/GSE11976/00.PrepareData.R
acnr/inst/preprocessing/GSE11976/01.defineCopyNumberSegments.R
acnr/inst/preprocessing/GSE11976/02.exportRegionData.R
acnr/inst/preprocessing/GSE11976/03.mergeCnRegionData.R
acnr/inst/preprocessing/GSE11976/03.plotRegions.R
acnr/inst/preprocessing/GSE13372
acnr/inst/preprocessing/GSE13372/00.install.R
acnr/inst/preprocessing/GSE13372/01.checkAnnotationData.R
acnr/inst/preprocessing/GSE13372/01.downloadAnnotationData.R
acnr/inst/preprocessing/GSE13372/02.downloadRawData.R
acnr/inst/preprocessing/GSE13372/03.doASCRMAv2.R
acnr/inst/preprocessing/GSE13372/04.writeWholeGenomeData.R
acnr/inst/preprocessing/GSE13372/05.defineCopyNumberSegments.R
acnr/inst/preprocessing/GSE13372/06.exportRegionData.R
acnr/inst/preprocessing/GSE13372/07.mergeCnRegionData.R
acnr/inst/preprocessing/GSE29172
acnr/inst/preprocessing/GSE29172/00.install.R
acnr/inst/preprocessing/GSE29172/01.checkAnnotationData.R
acnr/inst/preprocessing/GSE29172/02.doASCRMAv2.R
acnr/inst/preprocessing/GSE29172/03.writeWholeGenomeData.R
acnr/inst/preprocessing/GSE29172/04.plotTracks.R
acnr/inst/preprocessing/GSE29172/05.defineCopyNumberSegments.R
acnr/inst/preprocessing/GSE29172/06.plotCopyNumberSegments.R
acnr/inst/preprocessing/GSE29172/07.exportRegionData.R
acnr/inst/preprocessing/GSE29172/08.mergeCnRegionData.R
acnr/inst/preprocessing/GSE29172/09.LightCnRegionData.R
acnr/man
acnr/man/acnr-package.Rd
acnr/man/loadCnRegionData.Rd
acnr/vignettes
acnr/vignettes/acnr.Rnw