fission: Fission pattern and heritable morphological traits
In ade4: Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
Description
Usage
Format
References
Examples
Description
This data set contains the mean values of five highly heritable linear combinations of cranial metric (GM1-GM3) and non metric (GN1-GN2) for 8 social groups of Rhesus Macaques on Cayo Santiago. It also describes the fission tree depicting the historical phyletic relationships.
Usage
1
Format
fission is a list containing the 2 following objects :
- tre
is a character string giving the fission tree in Newick format.
- tab
is a data frame with 8 social groups and five traits : cranial metrics (GM1, GM2, GM3) and
cranial non metrics (GN1, GN2)
References
Cheverud, J. and Dow, M.M. (1985) An autocorrelation analysis of genetic variation due to lineal fission in social groups of rhesus macaques.
American Journal of Physical Anthropology, 67, 113–122.
Examples
1
2
3
4
data(fission)
fis.phy <- newick2phylog(fission$tre)
table.phylog(fission$tab[names(fis.phy$leaves),], fis.phy, csi = 2)
gearymoran(fis.phy$Amat, fission$tab)
ade4 documentation built on May 2, 2019, 5:50 p.m.
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Description Usage Format References Examples
Description
This data set contains the mean values of five highly heritable linear combinations of cranial metric (GM1-GM3) and non metric (GN1-GN2) for 8 social groups of Rhesus Macaques on Cayo Santiago. It also describes the fission tree depicting the historical phyletic relationships.
Usage
1 |
Format
fission is a list containing the 2 following objects :
- tre
is a character string giving the fission tree in Newick format.
- tab
is a data frame with 8 social groups and five traits : cranial metrics (GM1, GM2, GM3) and cranial non metrics (GN1, GN2)
References
Cheverud, J. and Dow, M.M. (1985) An autocorrelation analysis of genetic variation due to lineal fission in social groups of rhesus macaques. American Journal of Physical Anthropology, 67, 113–122.
Examples
1 2 3 4 | data(fission)
fis.phy <- newick2phylog(fission$tre)
table.phylog(fission$tab[names(fis.phy$leaves),], fis.phy, csi = 2)
gearymoran(fis.phy$Amat, fission$tab)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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