adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Share:

Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.

Author
Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Date of publication
2015-08-31 11:30:26
Maintainer
Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
License
GPL (>= 2)
Version
1.0-4
URLs

View on R-Forge

Man pages

add.ADEg
Superpose an new 'ADEg' graph to the previous ones plotted
addhist
Adds histograms and density lines against a bi-dimensional...
ADEg.C1-class
Class 'ADEg.C1'
ADEg-class
Class 'ADEg'
adeg.panel.label
Panel function for adding labels.
adeg.panel.nb
Panel functions for adding graphs.
adeg.panel.Spatial
Panel function for adding spatial objects.
adeg.panel.values
Panel function drawing a third variable into a...
adegpar
Handling ADEg graphical parameters
adegraphics-internal
For internal use only
adegraphics-package
Graphical objects for ade4 functions (and more)
ADEgS
Creation of 'ADEgS' objects
ADEg.S1-class
Class 'ADEg.S1'
ADEg.S2-class
Class 'ADEg.S2'
ADEgS-class
Class '"ADEgS"'
ADEg.T-class
Class 'ADEg.T'
ADEg.Tr-class
Class '"ADEg.Tr"'
C1.barchart-class
Class 'C1.barchart'
C1.curve-class
Class 'C1.curve'
C1.density-class
Class 'C1.density'
C1.dotplot-class
Class 'C1.dotplot'
C1.gauss-class
Class 'C1.gauss'
C1.hist-class
Class 'C1.hist'
C1.interval-class
Class 'C1.interval'
cbindADEg
Combine 'ADEg' objects by columns or rows
changelatticetheme
Change the 'lattice' theme used for 'adegraphics'
getcall-methods
Method for 'ADEg' and 'ADEgS' objects
insert
Insert a graphic into an existing one
layout2position
Transform a layout matrix into a position one
panel-methods
Methods 'panel' for 'ADEg' objects
plot
Methods to display the outputs of an analysis performed with...
plotEig
Plot a barchart of eigen values
prepare-methods
Methods 'prepare' for 'ADEg' objects
S1.boxplot-class
Class 'S1.boxplot'
S1.class-class
Class 'S1.class'
s1d.barchart
1-D plot of a numeric score by bars
s1d.boxplot
1-D box plot of a numeric score partitioned in classes...
s1d.class
1-D plot of a numeric score partitioned in classes (levels of...
s1d.curve
1-D plot of a numeric score linked by curves
s1d.density
1-D plot of a numeric score by density curves
s1d.distri
1-D plot of a numeric score by means/standard deviations...
s1d.dotplot
1-D plot of a numeric score by dots
s1d.gauss
1-D plot of a numeric score by Gaussian curves
s1d.hist
1-D plot of a numeric score by bars
s1d.interval
1-D plot of the interval between two numeric scores
S1.distri-class
Class 'S1.distri'
s1d.label
1-D plot of a numeric score with labels
s1d.match
1-D plot of the matching between two numeric scores
S1.label-class
Class 'S1.label'
S1.match-class
Class 'S1.match'
S2.arrow-class
Class 'S2.arrow'
S2.class-class
Class 'S2.class'
S2.corcircle-class
Class 'S2.corcircle'
S2.density-class
Class 'S2.density'
S2.distri-class
Class 'S2.distri'
S2.image-class
Class 'S2.image'
S2.label-class
Class 'S2.label'
S2.logo-class
Class 'S2.logo'
S2.match-class
Class 'S2.match'
S2.traject-class
Class 'S2.traject'
S2.value-class
Class 'S2.value'
s.arrow
2-D scatter plot with arrows
s.class
2-D scatter plot with a partition in classes (levels of a...
s.corcircle
Correlation circle
s.density
2-D scatter plot with kernel density estimation
s.distri
2-D scatter plot with means/standard deviations computed...
setlimits1D
Computes limits for 1D and 2D displays.
s.image
2-D scatter plot with loess estimation of an additional...
s.label
2-D scatter plot with labels
s.logo
2-D scatter plot with logos (bitmap objects)
s.match
2-D scatter plot of the matching between two sets of...
sortparamADEg
Sort a sequence of graphical parameters
s.Spatial
Mapping of a Spatial* object
s.traject
2-D scatter plot with trajectories
superpose
Superpose two graphics
s.value
2-D scatter plot with proportional symbols (bubble plot)
table.image
Heat map-like representation with colored cells
table.value
Heat map-like representation with proportional symbols
T.cont-class
Class 'T.cont'
T.image-class
Class 'T.image'
Tr.class-class
Class 'Tr.class'
triangle.class
Ternary plot with a partition in classes (levels of a factor)
triangle.label
Ternary plot with labels
triangle.match
Ternary plot of the matching between two sets of coordinates
triangle.traject
Ternary plot with trajectories
Tr.label-class
Class 'Tr.label'
Tr.match-class
Class 'Tr.match'
Tr.traject-class
Class 'Tr.traject'
T.value-class
Class 'T.value'
zoom
Zoom in or out

Files in this package

adegraphics/DESCRIPTION
adegraphics/NAMESPACE
adegraphics/R
adegraphics/R/ADEg.C1.R
adegraphics/R/ADEg.R
adegraphics/R/ADEg.S1.R
adegraphics/R/ADEg.S2.R
adegraphics/R/ADEg.T.R
adegraphics/R/ADEg.Tr.R
adegraphics/R/ADEgS.R
adegraphics/R/C1.barchart.R
adegraphics/R/C1.curve.R
adegraphics/R/C1.density.R
adegraphics/R/C1.dotplot.R
adegraphics/R/C1.gauss.R
adegraphics/R/C1.hist.R
adegraphics/R/C1.interval.R
adegraphics/R/S1.boxplot.R
adegraphics/R/S1.class.R
adegraphics/R/S1.distri.R
adegraphics/R/S1.label.R
adegraphics/R/S1.match.R
adegraphics/R/S2.arrow.R
adegraphics/R/S2.class.R
adegraphics/R/S2.corcircle.R
adegraphics/R/S2.density.R
adegraphics/R/S2.distri.R
adegraphics/R/S2.image.R
adegraphics/R/S2.label.R
adegraphics/R/S2.logo.R
adegraphics/R/S2.match.R
adegraphics/R/S2.traject.R
adegraphics/R/S2.value.R
adegraphics/R/T.cont.R
adegraphics/R/T.image.R
adegraphics/R/T.value.R
adegraphics/R/Tr.class.R
adegraphics/R/Tr.label.R
adegraphics/R/Tr.match.R
adegraphics/R/Tr.traject.R
adegraphics/R/ade4-kplot.R
adegraphics/R/ade4-plot.R
adegraphics/R/ade4-scatter.R
adegraphics/R/adeGsenv.R
adegraphics/R/genericMethod.R
adegraphics/R/multiplot.R
adegraphics/R/panelfunctions.R
adegraphics/R/parameter.R
adegraphics/R/s.Spatial.R
adegraphics/R/s.hist.R
adegraphics/R/utils.R
adegraphics/R/utilsADEgS.R
adegraphics/R/utilsclass.R
adegraphics/R/utilskey.R
adegraphics/R/utilstriangle.R
adegraphics/build
adegraphics/build/vignette.rds
adegraphics/inst
adegraphics/inst/doc
adegraphics/inst/doc/adegraphics.R
adegraphics/inst/doc/adegraphics.Rnw
adegraphics/inst/doc/adegraphics.pdf
adegraphics/man
adegraphics/man/ADEg-class.Rd
adegraphics/man/ADEg.C1-class.Rd
adegraphics/man/ADEg.S1-class.Rd
adegraphics/man/ADEg.S2-class.Rd
adegraphics/man/ADEg.T-class.Rd
adegraphics/man/ADEg.Tr-class.Rd
adegraphics/man/ADEgS-class.Rd
adegraphics/man/ADEgS.Rd
adegraphics/man/C1.barchart-class.Rd
adegraphics/man/C1.curve-class.Rd
adegraphics/man/C1.density-class.Rd
adegraphics/man/C1.dotplot-class.Rd
adegraphics/man/C1.gauss-class.Rd
adegraphics/man/C1.hist-class.Rd
adegraphics/man/C1.interval-class.Rd
adegraphics/man/S1.boxplot-class.Rd
adegraphics/man/S1.class-class.Rd
adegraphics/man/S1.distri-class.Rd
adegraphics/man/S1.label-class.Rd
adegraphics/man/S1.match-class.Rd
adegraphics/man/S2.arrow-class.Rd
adegraphics/man/S2.class-class.Rd
adegraphics/man/S2.corcircle-class.Rd
adegraphics/man/S2.density-class.Rd
adegraphics/man/S2.distri-class.Rd
adegraphics/man/S2.image-class.Rd
adegraphics/man/S2.label-class.Rd
adegraphics/man/S2.logo-class.Rd
adegraphics/man/S2.match-class.Rd
adegraphics/man/S2.traject-class.Rd
adegraphics/man/S2.value-class.Rd
adegraphics/man/T.cont-class.Rd
adegraphics/man/T.image-class.Rd
adegraphics/man/T.value-class.Rd
adegraphics/man/Tr.class-class.Rd
adegraphics/man/Tr.label-class.Rd
adegraphics/man/Tr.match-class.Rd
adegraphics/man/Tr.traject-class.Rd
adegraphics/man/add.ADEg.Rd
adegraphics/man/addhist.Rd
adegraphics/man/adeg.panel.Spatial.Rd
adegraphics/man/adeg.panel.label.Rd
adegraphics/man/adeg.panel.nb.Rd
adegraphics/man/adeg.panel.values.Rd
adegraphics/man/adegpar.Rd
adegraphics/man/adegraphics-internal.Rd
adegraphics/man/adegraphics-package.Rd
adegraphics/man/cbindADEg.Rd
adegraphics/man/changelatticetheme.Rd
adegraphics/man/getcall-methods.Rd
adegraphics/man/insert.Rd
adegraphics/man/layout2position.Rd
adegraphics/man/panel-methods.Rd
adegraphics/man/plot.Rd
adegraphics/man/plotEig.Rd
adegraphics/man/prepare-methods.Rd
adegraphics/man/s.Spatial.Rd
adegraphics/man/s.arrow.Rd
adegraphics/man/s.class.Rd
adegraphics/man/s.corcircle.Rd
adegraphics/man/s.density.Rd
adegraphics/man/s.distri.Rd
adegraphics/man/s.image.Rd
adegraphics/man/s.label.Rd
adegraphics/man/s.logo.Rd
adegraphics/man/s.match.Rd
adegraphics/man/s.traject.Rd
adegraphics/man/s.value.Rd
adegraphics/man/s1d.barchart.Rd
adegraphics/man/s1d.boxplot.Rd
adegraphics/man/s1d.class.Rd
adegraphics/man/s1d.curve.Rd
adegraphics/man/s1d.density.Rd
adegraphics/man/s1d.distri.Rd
adegraphics/man/s1d.dotplot.Rd
adegraphics/man/s1d.gauss.Rd
adegraphics/man/s1d.hist.Rd
adegraphics/man/s1d.interval.Rd
adegraphics/man/s1d.label.Rd
adegraphics/man/s1d.match.Rd
adegraphics/man/setlimits1D.Rd
adegraphics/man/sortparamADEg.Rd
adegraphics/man/superpose.Rd
adegraphics/man/table.image.Rd
adegraphics/man/table.value.Rd
adegraphics/man/triangle.class.Rd
adegraphics/man/triangle.label.Rd
adegraphics/man/triangle.match.Rd
adegraphics/man/triangle.traject.Rd
adegraphics/man/zoom.Rd
adegraphics/tests
adegraphics/tests/add.R
adegraphics/tests/adegraphics.R
adegraphics/tests/nbgraph.R
adegraphics/tests/panelSpatial.R
adegraphics/tests/parameter.R
adegraphics/tests/s1d.boxplot.R
adegraphics/tests/s1d.density.R
adegraphics/tests/s1d.distri.R
adegraphics/tests/s1d.gauss.R
adegraphics/tests/s1d.label.R
adegraphics/tests/s1d.match.R
adegraphics/tests/s1dclass.R
adegraphics/tests/sarrow.R
adegraphics/tests/scatter.R
adegraphics/tests/sclass.R
adegraphics/tests/scorcircle.R
adegraphics/tests/sdensity.R
adegraphics/tests/sdistri.R
adegraphics/tests/shist.R
adegraphics/tests/simage.R
adegraphics/tests/slabel.R
adegraphics/tests/slogo.R
adegraphics/tests/smatch.R
adegraphics/tests/straject.R
adegraphics/tests/svalue.R
adegraphics/tests/tdist.R
adegraphics/tests/timage.R
adegraphics/tests/triangle.R
adegraphics/tests/tvalue.R
adegraphics/vignettes
adegraphics/vignettes/adegraphics.Rnw
adegraphics/vignettes/adegraphics.bib
adegraphics/vignettes/classes.png
adegraphics/vignettes/gargsVSclass.R
adegraphics/vignettes/gargsVSclass.csv
adegraphics/vignettes/paramVSfunction.R
adegraphics/vignettes/paramVSparam.R
adegraphics/vignettes/tableparamVSfunction.csv