biclustRank: Ranking of biclusters using another data source

Share:

Evaluation and re-ranking of gene-expression based biclusters according to another source of compound information, e.g. the chemical structure, target prediction, bioactivity data, etc. This is with the advantage of prioritizing subset of compounds with very similar profiles across data sources.

Author
Nolen Joy Perualila
Date of publication
2015-07-13 11:56:55
Maintainer
Nolen Joy Perualila <nolenjoy.perualila@uhasselt.be>
License
GPL-3
Version
1.0

View on R-Forge

Man pages

biclustRank-package
Ranking of Biclusters
boxplotBC
Boxplot of similarity scores by bicluster.
chooseFp
Select top features that differentiates the samples in the...
cumBC
Plot of cdf of similarity scores by bicluster.
Distance
Compute for the distance matrix of another data source.
expressionMatrix
Gene expression matrix example.
extractBicList
Extracting biclusters from the results of running fabia, isa,...
extractSimBC
Get the compound similarity matrix by bicluster.
fingerprints
Chemical structure data matrix example.
getLowerSim
Obtain the lower triangle similarity scores.
heatmapBC
Heatmap of similarity scores by BC.
heatmapBC2
Heatmap of the chemical structure data using the top features...
plotFabia
Plot of the gene loadings and/or sample scores by FABIA...
ppBC
Plot of gene profiles per bicluster.
statTab
Get the compound similarity matrix by bicluster.

Files in this package

biclustRank/DESCRIPTION
biclustRank/NAMESPACE
biclustRank/R
biclustRank/R/Distance.R
biclustRank/R/boxplotBC.R
biclustRank/R/choosefp.R
biclustRank/R/cumBC.R
biclustRank/R/extractBicList.R
biclustRank/R/extractSimBC.R
biclustRank/R/getLowerSim.R
biclustRank/R/heatmapBC.R
biclustRank/R/heatmapBC2.R
biclustRank/R/plotFabia.R
biclustRank/R/ppBC.R
biclustRank/R/statTab.R
biclustRank/data
biclustRank/data/expressionMatrix.rda
biclustRank/data/fingerprints.rda
biclustRank/man
biclustRank/man/Distance.Rd
biclustRank/man/biclustRank-package.Rd
biclustRank/man/boxplotBC.Rd
biclustRank/man/chooseFp.Rd
biclustRank/man/cumBC.Rd
biclustRank/man/expressionMatrix.Rd
biclustRank/man/extractBicList.Rd
biclustRank/man/extractSimBC.Rd
biclustRank/man/fingerprints.Rd
biclustRank/man/getLowerSim.Rd
biclustRank/man/heatmapBC.Rd
biclustRank/man/heatmapBC2.Rd
biclustRank/man/plotFabia.Rd
biclustRank/man/ppBC.Rd
biclustRank/man/statTab.Rd