biostatUZH: Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
Version 1.7.0

Various functions developed at the Department of Biostatistics, Epidemiology, Biostatistics and Prevention Institute, University of Zurich, Zurich, Switzerland. Currently implemented topics: several CI's for proportions, several CI's for diagnostic tests, Fagan-Nomogram, bootstrap CI's for the kappa coefficient, intraclass-correlation coefficients including CI's, agreement for continuous measurements (Bland-Altman plot), CI for the area under the curve (AUC), Mantel-Haenszel estimator, Mantel-Cox hazard ratio estimator, CI for the Kaplan-Meier estimate at given time points, CI for quantile of a Kaplan-Meier or cumulative incidence estimate, sample size computations for two-sample Mann-Whitney test, McNemar test, binary diagnostic test (via normal approximation and simulation), natural re-parametrization of Weibull output from survreg, hazard ratio and event time ratio interpretations, a plot to check the adequacy of the Weibull model.

AuthorSarah R. Haile [aut], Leonhard Held [aut, cre], Sebastian Meyer [aut], Sina Rueeger [aut], Kaspar Rufibach [aut], Daniel Sabanes Bove [ctb], R Core Team [cph]
Date of publication2017-03-23 14:21:49
MaintainerLeonhard Held <leonhard.held@uzh.ch>
LicenseGPL (>=2)
Version1.7.0
URL http://www.biostat.uzh.ch http://ebuzh.r-forge.r-project.org
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("biostatUZH", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

BlandAltman: Bland-Altman plot to assess agreement between two continuous...
computeICCrater: Compute intraclass correlation coefficients ICC(2, 1) and...
confIntAUCbinorm: Function to compute ROC curve and (bootstrap) confidence...
ConvertWeibull: Transformation of survreg output for the Weibull distribution
mantelCoxHR: Mantel-Cox estimator of the hazard ratio
plotcorr: Compact Visualization of a Correlation Matrix
WeibullReg: Weibull Regression for Survival Data
See all...

All man pages Function index File listing

Man pages

biostatUZH-package: Misc Tools of the Department of Biostatistics, EBPI,...
BlandAltman: Bland-Altman plot to assess agreement between two continuous...
computeICCrater: Compute intraclass correlation coefficients ICC(2, 1) and...
confIntAUC: Compute confidence interval for AUC
confIntAUCbinorm: Function to compute ROC curve and (bootstrap) confidence...
confIntDiagnostic: Compute confidence intervals for operating characteristics of...
confIntFisherTrafo: Confidence interval for correlation coefficient using...
confIntICC: Confidence intervals for intraclass correlation in interrater...
confIntIndependentDiagnostic: Compute confidence intervals for the comparison of two...
confIntIndependentProportion: Compute confidence interval for the risk difference of two...
confIntKappa: Confidence intervals for weighted kappa and m >= 2 raters
confIntKM_t0: Compute confidence interval for a survival curve at a fixed...
confIntMedian: Compute exact confidence interval for median of a sample...
confIntPairedDiagnostic: Compute confidence intervals for the comparison of two...
confIntPairedProportion: Compute confidence interval for the difference of paired...
confIntProportion: Compute confidence interval for a binomial proportion via...
confIntRiskDiff: Compute confidence interval for a risk difference
confIntRiskRatio: Compute confidence interval for a risk ratio
ConvertWeibull: Transformation of survreg output for the Weibull distribution
faganPlot: Fagan-Nomogram
fischdaten: Data of the 'Fischstudie'
formatCI: Format (Confidence) Intervals
formatPercent: Format a Numeric Proportion
formatPval: Format p-Values
larynx: Survival Times of Larynx Cancer Patients
logit: Logit and inverse-logit function
mantelCoxHR: Mantel-Cox estimator of the hazard ratio
mantelHaenszel: Cochran-Mantel-Haenszel Chi-Squared Test for Count Data
plotcorr: Compact Visualization of a Correlation Matrix
populationSamplePlot: Plot that shows population and sample drawn from it
quantileCumInc: Compute arbitrary quantile of a Cumulative Incidence estimate
quantileKM: Compute arbitrary quantile of a Kaplan-Meier estimate of a...
sampleSizeMcNemar: Compute sample size for McNemar test
sampleSizePhase2BinaryTest: Compute sample size for a Phase 2 study of a binary test
sampleSizeWilcoxTwoSample: Compute sample size for two sample Wilcoxon (Mann-Whitney)...
standardErrorAUC: Standard Error of AUC
summaryROC: Function to compute ROC curve and an asymptotic confidence...
survrep: Survival Analysis Results for Reports
tableRegression: Format Coefficient Tables of Regression Models
WeibullDiag: Diagnostic Plot of Adequacy of Weibull Distribution
WeibullReg: Weibull Regression for Survival Data

Functions

Files

DESCRIPTION
NAMESPACE
R
R/AUCbinorm.R
R/Aalpha.R
R/BlandAltman.R
R/ConvertWeibull.R
R/WeibullDiag.R
R/WeibullReg.R
R/agresti.R
R/behrensTest.R
R/clopperPearson.R
R/computeICCrater.R
R/confIntAUC.R
R/confIntAUCbinorm.R
R/confIntDiagnostic.R
R/confIntFisherTrafo.R
R/confIntICC.R
R/confIntIndependentDiagnostic.R
R/confIntIndependentProportion.R
R/confIntKM_t0.R
R/confIntKappa.R
R/confIntMedian.R
R/confIntPairedDiagnostic.R
R/confIntPairedProportion.R
R/confIntProportion.R
R/confIntRiskDiff.R
R/confIntRiskRatio.R
R/faganLine.R
R/faganPlot.R
R/formatCI.R
R/formatPercent.R
R/formatPval.R
R/is.wholenumber.R
R/jeffrey.R
R/jeffreys.R
R/lamAlpha.R
R/logit.R
R/mantelCoxHR.R
R/mantelHaenszel.R
R/plotcorr.R
R/populationSamplePlot.R
R/quantileCumInc.R
R/quantileKM.R
R/rootFct.R
R/sampleSizeMcNemar.R
R/sampleSizePhase2BinaryTest.R
R/sampleSizePhase2BinaryTestSimulated.R
R/sampleSizeWilcoxTwoSample.R
R/standardErrorAUC.R
R/summaryROC.R
R/survrep.R
R/tableRegression.R
R/wald.R
R/wilson.R
build
build/vignette.rds
data
data/fischdaten.rda
data/larynx.rda
inst
inst/NEWS.Rd
inst/doc
inst/doc/aucbinormal.Rnw
inst/doc/aucbinormal.pdf
inst/doc/weibull.R
inst/doc/weibull.Rnw
inst/doc/weibull.pdf
man
man/BlandAltman.Rd
man/ConvertWeibull.Rd
man/WeibullDiag.Rd
man/WeibullReg.Rd
man/biostatUZH-package.Rd
man/computeICCrater.Rd
man/confIntAUC.Rd
man/confIntAUCbinorm.Rd
man/confIntDiagnostic.Rd
man/confIntFisherTrafo.Rd
man/confIntICC.Rd
man/confIntIndependentDiagnostic.Rd
man/confIntIndependentProportion.Rd
man/confIntKM_t0.Rd
man/confIntKappa.Rd
man/confIntMedian.Rd
man/confIntPairedDiagnostic.Rd
man/confIntPairedProportion.Rd
man/confIntProportion.Rd
man/confIntRiskDiff.Rd
man/confIntRiskRatio.Rd
man/faganPlot.Rd
man/fischdaten.Rd
man/formatCI.Rd
man/formatPercent.Rd
man/formatPval.Rd
man/larynx.Rd
man/logit.Rd
man/mantelCoxHR.Rd
man/mantelHaenszel.Rd
man/plotcorr.Rd
man/populationSamplePlot.Rd
man/quantileCumInc.Rd
man/quantileKM.Rd
man/sampleSizeMcNemar.Rd
man/sampleSizePhase2BinaryTest.Rd
man/sampleSizeWilcoxTwoSample.Rd
man/standardErrorAUC.Rd
man/summaryROC.Rd
man/survrep.Rd
man/tableRegression.Rd
vignettes
vignettes/aucbinormal.Rnw
vignettes/aucbinormal.bib
vignettes/ims.bst
vignettes/weibull.Rnw
vignettes/weibull.bib
biostatUZH documentation built on May 21, 2017, 12:50 a.m.

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