| align_feat_boruta | Create matrix with aligned feature sets from Boruta results. |
| align_features | Create matrix with aligned feature sets from SVM SCAD... |
| bootfs-package | Use multiple feature selection algorithms to derive robust... |
| bootstrap_roc | Create roc curves from bootstrapping classification results. |
| bsGBM | Wrapper for GBM bootstrapping |
| bsPAMR | Perform PAMR bootstrapping. |
| bsRFBORUTA | Perform RFBORUTA bootstrapping. |
| bsSCAD | Perform SCAD SVM bootstrapping. |
| bstr_multi | SVM SCAD bootstrapping classification and feature selection. |
| control_params | Create control parameter object for the classifiers |
| cvGBM | Make a crossvalidation using GBM. |
| cv_gbmclass | Internal crossvalidation method for GBM classification |
| cv_pamclass | Wrapper for PAMR classification call. |
| cvPAMR | Main wrapper to call PAMR crossvalidation. |
| cv_penalizedSVM | SVM SCAD crossvalidation. |
| cvRFBORUTA | Crossvalidation for Random Forests with Boruta feature... |
| cv_rfclass | Wrapper for RF Boruta classification crossvalidation. |
| cvSCAD | Crossvalidation for SCAD SVM classification and feature... |
| dist.eucsq | Squared euclidean distance metric. Used for ward clustering. |
| doBS | Perform bootstrapped feature selection with multiple... |
| doCV | Performance evaluation by crossvalidation for multiple... |
| drawheat | Wrapper for heatmap drawing. |
| extract_feat_boruta | Feature extraction for Boruta bootstrapping results. |
| extract_feat_pam | Feature extraction for PAMR bootstrapping results. |
| extract_feature_rankings | Feature ranking extraction for SVM SCAD bootstrapping... |
| extract_features | Helper for feature extraction. |
| extract_features_rf_boruta | Helper for feature extraction for RF Boruta. |
| extractsignatures | Helper for extracting all feature signatures from a... |
| fitGBM | Fit a Gradient Boosting Machine model. |
| gbm_multi | Calling function to GBM bootstrapping |
| get_ellipsis_a | Helper for importance graph drawing. |
| get_feature_ranking | Get a feature ranking. Helper for SVM SCAD feature... |
| get_pam_features | Helper for PAMR feature extraction. |
| importance_igraph | Graphically represent the (co-)occurrences of a set of... |
| layout.ellipsis | Layout function creating an ellipsis. |
| makeIG | Create an importance graph from a bootstrapping result of a... |
| resultBS | Summarise the results of a bootstrapping analysis. |
| resultCV | create a result plot for all performed crossvalidations |
| rf_multi | Wrapper for RF Boruta bootstrapping. |
| roc | Draw ROC curve. |
| run_pam | Wrapper for PAMR bootstrapping classification. |
| select_bootstrap_data | Select bootstrapping samples preserving group member... |
| select_cv_balanced | Balanced training/test set selection for crossvalidation. |
| select_threshold | Find optimal threshold for PAMR feature selection. |
| simDataSet | simDataSet - simulation of exemplary dataset |
| svmclass | Wrapper for SVM SCAD classification call. |
| ward | Clustering function using ward clustering. |
