c060: Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
Version 0.2-5

c060 provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models

AuthorMartin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker.
Date of publication2017-01-10 12:07:53
MaintainerMartin Sill <m.sill@dkfz.de>
LicenseGPL-2
Version0.2-5
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("c060", repos="http://R-Forge.R-project.org")

Popular man pages

balancedFolds: Function producing stratified/ balanced folds for cross...
coef.intsearch: Get coefficients for a model
Plot.peperr.curves: Plot method for prediction error curves of a peperr object
predictProb.coxnet: Extract predicted survival probabilities from a glmnet fit
predictProb.glmnet: Extract predicted survival probabilities from a glmnet fit
summary.intsearch: Summary method for interval search models
tune.glmnet.interval: Wrapper function for 'glmnet' objects.
See all...

All man pages Function index File listing

Man pages

aggregation.auc: Determine the area under the ROC curve for a fitted model
balancedFolds: Function producing stratified/ balanced folds for cross...
coef.intsearch: Get coefficients for a model
complexity.glmnet: Interface for determination of penalty lambda in penalized...
EPSGO: Efficient Parameter Selection via Global Optimization
fit.glmnet: Interface function for fitting a penalized regression model...
PLL.coxnet: Predictive partial log-likelihood for glmnet Cox PH model fit
Plot.coef.glmnet: function to highlight the path of a pre-specified set of...
Plot.peperr.curves: Plot method for prediction error curves of a peperr object
plot.stabpath: function to plot a stability path
plot.summary.int: Plot Summary object for interval search models
predictProb.coxnet: Extract predicted survival probabilities from a glmnet fit
predictProb.glmnet: Extract predicted survival probabilities from a glmnet fit
stabpath: Stability path for glmnet models
stabsel: function to estimate a stable set of variables
summary.intsearch: Summary method for interval search models
tune.glmnet.interval: Wrapper function for 'glmnet' objects.

Functions

PLL.coxnet Man page Source code
Plot.coef.glmnet Man page Source code
Plot.peperr.curves Man page Source code
aggregation.auc Man page Source code
aggregation.brier Source code
aggregation.misclass Source code
balancedFolds Source code
balancedFolds Man page
basesurv Source code
coef.sum.intsearch Man page Source code
complexity.glmnet Man page Source code
epsgo Man page Source code
fit.glmnet Man page Source code
glmnet.subset Source code
plot.stabpath Man page Source code
plot.sum.intsearch Man page Source code
predictProb.coxnet Man page
predictProb.glmnet Man page
print.stabpath Source code
stabpath Man page Source code
stabsel Man page Source code
summary.intsearch Man page Source code
tune.glmnet.interval Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/EPSGO.R
R/balancedFolds.R
R/coef_intsearch.R
R/peperr_glmnet.R
R/plot_coef_glmnet.R
R/plot_summary_inter_search.R
R/stabilityselection.R
R/summary_inter_search.R
R/tune_glmnet_interval.R
inst
inst/CITATION
inst/doc
inst/doc/c060_vignette_nojss.pdf
man
man/EPSGO.Rd
man/PLL.coxnet.Rd
man/Plot.coef.glmnet.Rd
man/Plot.peperr.curves.Rd
man/aggregation.auc.Rd
man/balancedFolds.Rd
man/coef.intsearch.Rd
man/complexity.glmnet.Rd
man/fit.glmnet.Rd
man/plot.stabpath.Rd
man/plot.summary.int.Rd
man/predictProb.coxnet.Rd
man/predictProb.glmnet.Rd
man/stabpath.Rd
man/stabsel.Rd
man/summary.intsearch.Rd
man/tune.glmnet.interval.Rd
c060 documentation built on May 21, 2017, 12:22 a.m.

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