c3net: Infering large-scale gene networks with C3NET
Version 1.1.1

This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

AuthorGokmen Altay, Frank Emmert-Streib
Date of publicationNone
MaintainerGokmen Altay <altayscience@gmail.com>
LicenseGPL (>=3)
Version1.1.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("c3net", repos="http://R-Forge.R-project.org")

Popular man pages

c3: C3NET second step: Selecting maximum valued elements
checknet: Validating the inferred network
copula: Copula transformation of data set
expdata: Example data set
makemim: Constructing mutual information matrix
sigtestMTC: Elimination of nonsignificant edges by application of a...
truenet: Reference, e.g. true, network of the example data set
See all...

All man pages Function index File listing

Man pages

c3: C3NET second step: Selecting maximum valued elements
c3net: All in one function to infer network with C3NET
checknet: Validating the inferred network
copula: Copula transformation of data set
expdata: Example data set
makemim: Constructing mutual information matrix
netplot: Plotting the inferred network
sigtestMTC: Elimination of nonsignificant edges by application of a...
sigtestp: Significance test for elimination of nonsignificant edges
truenet: Reference, e.g. true, network of the example data set

Functions

c3 Man page Source code
c3net Man page Source code
checknet Man page Source code
copula Man page Source code
expdata Man page
makemim Man page Source code
netplot Man page Source code
sigtestMTC Man page Source code
sigtestp Man page Source code
truenet Man page

Files

NAMESPACE
data
data/expdata.rda
data/truenet.rda
R
R/netplot.R
R/sigtestMTC.R
R/c3.R
R/c3net.R
R/sigtestp.R
R/checknet.R
R/copula.R
R/makemim.R
inst
inst/CITATION
inst/doc
inst/doc/README.txt
inst/doc/EXAMPLE.txt
inst/doc/c3net-manual.pdf
DESCRIPTION
README
man
man/sigtestp.Rd
man/netplot.Rd
man/truenet.Rd
man/copula.Rd
man/checknet.Rd
man/sigtestMTC.Rd
man/makemim.Rd
man/expdata.Rd
man/c3.Rd
man/c3net.Rd
c3net documentation built on May 21, 2017, 1:13 a.m.

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