c3net: Infering large-scale gene networks with C3NET

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This package allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

Author
Gokmen Altay, Frank Emmert-Streib
Date of publication
None
Maintainer
Gokmen Altay <altayscience@gmail.com>
License
GPL (>=3)
Version
1.1.1

View on R-Forge

Man pages

c3
C3NET second step: Selecting maximum valued elements
c3net
All in one function to infer network with C3NET
checknet
Validating the inferred network
copula
Copula transformation of data set
expdata
Example data set
makemim
Constructing mutual information matrix
netplot
Plotting the inferred network
sigtestMTC
Elimination of nonsignificant edges by application of a...
sigtestp
Significance test for elimination of nonsignificant edges
truenet
Reference, e.g. true, network of the example data set

Files in this package

c3net
c3net/NAMESPACE
c3net/data
c3net/data/expdata.rda
c3net/data/truenet.rda
c3net/R
c3net/R/netplot.R
c3net/R/sigtestMTC.R
c3net/R/c3.R
c3net/R/c3net.R
c3net/R/sigtestp.R
c3net/R/checknet.R
c3net/R/copula.R
c3net/R/makemim.R
c3net/inst
c3net/inst/CITATION
c3net/inst/doc
c3net/inst/doc/README.txt
c3net/inst/doc/EXAMPLE.txt
c3net/inst/doc/c3net-manual.pdf
c3net/DESCRIPTION
c3net/README
c3net/man
c3net/man/sigtestp.Rd
c3net/man/netplot.Rd
c3net/man/truenet.Rd
c3net/man/copula.Rd
c3net/man/checknet.Rd
c3net/man/sigtestMTC.Rd
c3net/man/makemim.Rd
c3net/man/expdata.Rd
c3net/man/c3.Rd
c3net/man/c3net.Rd