makemim: Constructing mutual information matrix

Description Usage Arguments Details Value References See Also Examples

View source: R/makemim.R

Description

makemim takes the data set as input and computes mutual information values for each pair of variables (e.g. gene). - see details.

Usage

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Arguments

expdata

Data matrix where rows correspond to variables (e.g. genes) and columns to samples.

Details

A mutual information matrix is generated from a data set using an empirical Gaussian estimator.

Value

makemim returns a symmetric mutual information matrix using empirical Gaussian estimator.

References

G. A. Darbellay, I. Vajda, "Estimation of the information by an adaptive partitioning of the observation space", IEEE Trans. Inf. Theory vol.45 (1999)

G. Altay, F. Emmert-Streib, "Inferring the conservative causal core of gene regulatory networks", BMC Systems Biology, (2010) 4:132.

See Also

c3,c3net, copula, checknet

Examples

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c3net documentation built on May 2, 2019, 5:20 p.m.

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