caspr: Cellular Automata for Spatial Pressure in R

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The project package for a study on spatial indicators of catastrophic shifts. Functions to run and analyse a set of cellular automata models that implement a spatially explicit pressure.

Author
Alain Danet, Alex Genin, Vishwesha Guttal, Sonia Kefi, Sabiha Majumder, Sumithra Sankaran, Florian Schneider (Maintainer)
Date of publication
2015-11-30 23:17:18
Maintainer
Florian D. Schneider <florian.schneider@univ-montp2.fr>
License
MIT + file LICENSE
Version
0.2.0
URLs

View on R-Forge

Man pages

as.array.ca_result
Transfer output of runca() into an array.
as.landscape
generic S3 function
as.landscape.matrix
transfer matrix to landscape.
as.list.ca_result
Transfer output of ca() into a list of matrices.
as.matrix.landscape
transfer landscape to matrix.
birthdeath
Birth-death model
ca
Run cellular automata simulation.
ca_animate
Create animated gif or video from simulation result.
ca_array
Run ca() over a parameter array.
count.landscape
Count neighbors.
forestgap
Forest gap model
grazing
Grazing model
init_landscape
Create a new landscape object, i.e. a grid for cellular...
life
Conway's Game of Life
livestock
Livestock resilience model
mapping
Create vector maps for cellular automata updating.
musselbed
Musselbed Disturbance Model
neighbors
Count neighbors.
neighborsij
Count neighbors of one cell.
plot.ca_result
plot method for 'ca_result' objects
plot.landscape
Plotting an objects of class "landscape"
predprey
Predator-prey model
print.ca_model
print function for model objects
steady
Test for steady state dynamics of timeseries.
summary.ca_result
summary method for 'ca_result'
summary.landscape
Summary of landscape object.
template
Template for model objects

Files in this package

caspr/DESCRIPTION
caspr/LICENSE
caspr/NAMESPACE
caspr/R
caspr/R/RcppExports.R
caspr/R/animate.R
caspr/R/birthdeath_null.R
caspr/R/ca.R
caspr/R/ca_array.R
caspr/R/caspr.R
caspr/R/count.R
caspr/R/forestgap.R
caspr/R/grazing.R
caspr/R/landscape.R
caspr/R/life.R
caspr/R/livestock.R
caspr/R/model_methods.R
caspr/R/model_template.R
caspr/R/musselbed.R
caspr/R/predprey.R
caspr/R/rcpp-tags.R
caspr/R/steady.R
caspr/README.md
caspr/build
caspr/build/vignette.rds
caspr/inst
caspr/inst/doc
caspr/inst/doc/caspr-manual.pdf
caspr/inst/doc/caspr.Rmd
caspr/inst/doc/caspr.html
caspr/inst/doc/caspr.pdf
caspr/man
caspr/man/as.array.ca_result.Rd
caspr/man/as.landscape.Rd
caspr/man/as.landscape.matrix.Rd
caspr/man/as.list.ca_result.Rd
caspr/man/as.matrix.landscape.Rd
caspr/man/birthdeath.Rd
caspr/man/ca.Rd
caspr/man/ca_animate.Rd
caspr/man/ca_array.Rd
caspr/man/count.landscape.Rd
caspr/man/forestgap.Rd
caspr/man/grazing.Rd
caspr/man/init_landscape.Rd
caspr/man/life.Rd
caspr/man/livestock.Rd
caspr/man/mapping.Rd
caspr/man/musselbed.Rd
caspr/man/neighbors.Rd
caspr/man/neighborsij.Rd
caspr/man/plot.ca_result.Rd
caspr/man/plot.landscape.Rd
caspr/man/predprey.Rd
caspr/man/print.ca_model.Rd
caspr/man/steady.Rd
caspr/man/summary.ca_result.Rd
caspr/man/summary.landscape.Rd
caspr/man/template.Rd
caspr/src
caspr/src/RcppExports.cpp
caspr/src/predprey_core.cpp
caspr/tests
caspr/tests/testthat
caspr/tests/testthat.R
caspr/tests/testthat/test-forestgap.R
caspr/tests/testthat/test-init_landscape.R
caspr/tests/testthat/test-predprey.R
caspr/tests/testthat/test-transfers.R
caspr/vignettes
caspr/vignettes/caspr.Rmd