coin: Conditional Inference Procedures in a Permutation Test Framework

Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.

AuthorTorsten Hothorn [aut, cre], Kurt Hornik [aut], Mark A. van de Wiel [aut], Henric Winell [aut], Achim Zeileis [aut]
Date of publication2017-04-12 15:52:49
MaintainerTorsten Hothorn <Torsten.Hothorn@R-project.org>
LicenseGPL-2
Version1.2-0
http://coin.r-forge.r-project.org

View on R-Forge

Man pages

alpha: Genetic Components of Alcoholism

alzheimer: Smoking and Alzheimer's Disease

asat: Toxicological Study on Female Wistar Rats

coin-package: General Information on the 'coin' Package

ContingencyTests: Tests of Independence in Two- or Three-Way Contingency Tables

CorrelationTests: Correlation Tests

CWD: Coarse Woody Debris

expectation-methods: Extraction of the Expectation, Variance and Covariance of the...

ExpectCovar-class: Class '"ExpectCovar"'

ExpectCovarInfluence-class: Class '"ExpectCovarInfluence"'

glioma: Malignant Glioma Pilot Study

GTSG: Gastrointestinal Tumor Study Group

hohnloser: Left Ventricular Ejection Fraction

IndependenceLinearStatistic-class: Class '"IndependenceLinearStatistic"'

IndependenceProblem-class: Class '"IndependenceProblem"'

IndependenceTest: General Independence Test

IndependenceTest-class: Class '"IndependenceTest"' and its subclasses

IndependenceTestProblem-class: Class '"IndependenceTestProblem"'

IndependenceTestStatistic-class: Class '"IndependenceTestStatistic"' and its subclasses

jobsatisfaction: Income and Job Satisfaction

LocationTests: Two- and K-Sample Location Tests

malformations: Maternal Drinking and Congenital Sex Organ Malformation

MarginalHomogeneityTests: Marginal Homogeneity Tests

MaximallySelectedStatisticsTests: Generalized Maximally Selected Statistics

mercuryfish: Chromosomal Effects of Mercury-Contaminated Fish Consumption

neuropathy: Acute Painful Diabetic Neuropathy

NullDistribution: Specification of the Reference Distribution

NullDistribution-class: Class '"NullDistribution"' and its subclasses

NullDistribution-methods: Computation of the Reference Distribution

ocarcinoma: Ovarian Carcinoma

PermutationDistribution-methods: Computation of the Permutation Distribution

photocar: Multiple Dosing Photococarcinogenicity Experiment

PValue-class: Class '"PValue"'

pvalue-methods: Computation of the p-Value, Mid-p-Value and p-Value Interval

rotarod: Rotating Rats

ScaleTests: Two- and K-Sample Scale Tests

statistic-methods: Extraction of the Test Statistic and Linear Statistic

SurvivalTests: Two- and K-Sample Tests for Censored Data

SymmetryProblem-class: Class '"SymmetryProblem"'

SymmetryTest: General Symmetry Test

SymmetryTests: Symmetry Tests

Transformations: Functions for Data Transformation

treepipit: Tree Pipits in Franconian Oak Forests

VarCovar-class: Class '"VarCovar"' and its subclasses

vision: Unaided Distance Vision

Functions

alpha Man page
alzheimer Man page
ansari_test Man page
ansari_test.formula Man page
ansari_test.IndependenceProblem Man page
ansari_trafo Man page
approximate Man page
ApproxNullDistribution Man page
ApproxNullDistribution-class Man page
ApproxNullDistribution,MaxTypeIndependenceTestStatistic-method Man page
ApproxNullDistribution-methods Man page
ApproxNullDistribution,QuadTypeIndependenceTestStatistic-method Man page
ApproxNullDistribution,ScalarIndependenceTestStatistic-method Man page
asat Man page
AsymptNullDistribution Man page
AsymptNullDistribution-class Man page
AsymptNullDistribution,MaxTypeIndependenceTestStatistic-method Man page
AsymptNullDistribution-methods Man page
AsymptNullDistribution,QuadTypeIndependenceTestStatistic-method Man page
AsymptNullDistribution,ScalarIndependenceTestStatistic-method Man page
asymptotic Man page
chisq_test Man page
chisq_test.formula Man page
chisq_test.IndependenceProblem Man page
chisq_test.table Man page
cmh_test Man page
cmh_test.formula Man page
cmh_test.IndependenceProblem Man page
cmh_test.table Man page
coin Man page
coin-package Man page
conover_test Man page
conover_test.formula Man page
conover_test.IndependenceProblem Man page
consal_trafo Man page
covariance Man page
covariance,CovarianceMatrix-method Man page
covariance,IndependenceLinearStatistic-method Man page
covariance,IndependenceTest-method Man page
CovarianceMatrix-class Man page
covariance-methods Man page
CWD Man page
dperm Man page
dperm,AsymptNullDistribution-method Man page
dperm,IndependenceTest-method Man page
dperm-methods Man page
dperm,NullDistribution-method Man page
exact Man page
ExactNullDistribution Man page
ExactNullDistribution-class Man page
ExactNullDistribution-methods Man page
ExactNullDistribution,QuadTypeIndependenceTestStatistic-method Man page
ExactNullDistribution,ScalarIndependenceTestStatistic-method Man page
expectation Man page
expectation,IndependenceLinearStatistic-method Man page
expectation,IndependenceTest-method Man page
expectation-methods Man page
ExpectCovar-class Man page
ExpectCovarInfluence-class Man page
fisyat_test Man page
fisyat_test.formula Man page
fisyat_test.IndependenceProblem Man page
fligner_test Man page
fligner_test.formula Man page
fligner_test.IndependenceProblem Man page
fligner_trafo Man page
fmaxstat_trafo Man page
friedman_test Man page
friedman_test.formula Man page
friedman_test.SymmetryProblem Man page
f_trafo Man page
glioma Man page
GTSG Man page
hohnloser Man page
id_trafo Man page
IndependenceLinearStatistic-class Man page
IndependenceProblem-class Man page
independence_test Man page
IndependenceTest-class Man page
independence_test.formula Man page
independence_test.IndependenceProblem Man page
IndependenceTestProblem-class Man page
IndependenceTestStatistic-class Man page
independence_test.table Man page
initialize,CovarianceMatrix-method Man page
initialize,ExpectCovarInfluence-method Man page
initialize,ExpectCovar-method Man page
initialize,IndependenceLinearStatistic-method Man page
initialize,IndependenceProblem-method Man page
initialize,IndependenceTestProblem-method Man page
initialize,MaxTypeIndependenceTestStatistic-method Man page
initialize,QuadTypeIndependenceTestStatistic-method Man page
initialize,ScalarIndependenceTestStatistic-method Man page
initialize,SymmetryProblem-method Man page
initialize,Variance-method Man page
jobsatisfaction Man page
klotz_test Man page
klotz_test.formula Man page
klotz_test.IndependenceProblem Man page
klotz_trafo Man page
koziol_test Man page
koziol_test.formula Man page
koziol_test.IndependenceProblem Man page
koziol_trafo Man page
kruskal_test Man page
kruskal_test.formula Man page
kruskal_test.IndependenceProblem Man page
lbl_test Man page
lbl_test.formula Man page
lbl_test.IndependenceProblem Man page
lbl_test.table Man page
logrank_test Man page
logrank_test.formula Man page
logrank_test.IndependenceProblem Man page
logrank_trafo Man page
logrank_weight Man page
malformations Man page
maxstat_test Man page
maxstat_test.formula Man page
maxstat_test.IndependenceProblem Man page
maxstat_test.table Man page
maxstat_trafo Man page
MaxTypeIndependenceTest-class Man page
MaxTypeIndependenceTestStatistic-class Man page
mcp_trafo Man page
median_test Man page
median_test.formula Man page
median_test.IndependenceProblem Man page
median_trafo Man page
mercuryfish Man page
mh_test Man page
mh_test.formula Man page
mh_test.SymmetryProblem Man page
mh_test.table Man page
midpvalue Man page
midpvalue,IndependenceTest-method Man page
midpvalue-methods Man page
midpvalue,NullDistribution-method Man page
mood_test Man page
mood_test.formula Man page
mood_test.IndependenceProblem Man page
mood_trafo Man page
neuropathy Man page
normal_test Man page
normal_test.formula Man page
normal_test.IndependenceProblem Man page
normal_trafo Man page
NullDistribution-class Man page
ocarcinoma Man page
ofmaxstat_trafo Man page
of_trafo Man page
oneway_test Man page
oneway_test.formula Man page
oneway_test.IndependenceProblem Man page
photocar Man page
pperm Man page
pperm,AsymptNullDistribution-method Man page
pperm,IndependenceTest-method Man page
pperm-methods Man page
pperm,NullDistribution-method Man page
pvalue Man page
PValue-class Man page
pvalue,IndependenceTest-method Man page
pvalue_interval Man page
pvalue_interval,IndependenceTest-method Man page
pvalue_interval-methods Man page
pvalue_interval,NullDistribution-method Man page
pvalue,MaxTypeIndependenceTest-method Man page
pvalue-methods Man page
pvalue,NullDistribution-method Man page
qperm Man page
qperm,AsymptNullDistribution-method Man page
qperm,IndependenceTest-method Man page
qperm-methods Man page
qperm,NullDistribution-method Man page
quade_test Man page
quade_test.formula Man page
quade_test.SymmetryProblem Man page
quadrant_test Man page
quadrant_test.formula Man page
quadrant_test.IndependenceProblem Man page
QuadTypeIndependenceTest-class Man page
QuadTypeIndependenceTestStatistic-class Man page
rank_trafo Man page
rotarod Man page
rperm Man page
rperm,IndependenceTest-method Man page
rperm-methods Man page
rperm,NullDistribution-method Man page
savage_test Man page
savage_test.formula Man page
savage_test.IndependenceProblem Man page
savage_trafo Man page
ScalarIndependenceTest-class Man page
ScalarIndependenceTestConfint-class Man page
ScalarIndependenceTestStatistic-class Man page
show,IndependenceTest-method Man page
show,MaxTypeIndependenceTest-method Man page
show,QuadTypeIndependenceTest-method Man page
show,ScalarIndependenceTestConfint-method Man page
show,ScalarIndependenceTest-method Man page
sign_test Man page
sign_test.formula Man page
sign_test.SymmetryProblem Man page
spearman_test Man page
spearman_test.formula Man page
spearman_test.IndependenceProblem Man page
statistic Man page
statistic,IndependenceLinearStatistic-method Man page
statistic,IndependenceTest-method Man page
statistic,IndependenceTestStatistic-method Man page
statistic-methods Man page
support Man page
support,IndependenceTest-method Man page
support-methods Man page
support,NullDistribution-method Man page
surv_test Man page
SymmetryProblem-class Man page
symmetry_test Man page
symmetry_test.formula Man page
symmetry_test.SymmetryProblem Man page
symmetry_test.table Man page
taha_test Man page
taha_test.formula Man page
taha_test.IndependenceProblem Man page
trafo Man page
treepipit Man page
VarCovar-class Man page
variance Man page
Variance-class Man page
variance,CovarianceMatrix-method Man page
variance,IndependenceLinearStatistic-method Man page
variance,IndependenceTest-method Man page
variance-methods Man page
variance,Variance-method Man page
vision Man page
wilcoxsign_test Man page
wilcoxsign_test.formula Man page
wilcoxsign_test.SymmetryProblem Man page
wilcox_test Man page
wilcox_test.formula Man page
wilcox_test.IndependenceProblem Man page

Files

DESCRIPTION
NAMESPACE
R
R/AAA.R R/Classes.R R/Confints.R R/ContingencyTests.R R/ContrastTest.R R/CorrelationTests.R R/ExactDistributions.R R/IndependenceTest.R R/InitMethods.R R/LocationTests.R R/MTP.R R/MarginalHomogeneityTests.R R/MaximallySelectedStatisticsTests.R R/Methods.R R/MonteCarloDistributions.R R/Print.R R/ScaleTests.R R/SurvivalTests.R R/SymmetryTest.R R/SymmetryTests.R R/Transformations.R R/helpers.R R/zAccess.R
build
build/vignette.rds
cleanup
data
data/CWD.rda
data/GTSG.rda
data/alpha.rda
data/alzheimer.rda
data/asat.rda
data/glioma.rda
data/hohnloser.rda
data/jobsatisfaction.rda
data/malformations.rda
data/mercuryfish.rda
data/neuropathy.rda
data/ocarcinoma.rda
data/photocar.rda
data/rotarod.rda
data/treepipit.rda
data/vision.rda
inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/LegoCondInf.R
inst/doc/LegoCondInf.Rnw
inst/doc/LegoCondInf.pdf
inst/doc/MAXtest.R
inst/doc/MAXtest.Rnw
inst/doc/MAXtest.pdf
inst/doc/coin.R
inst/doc/coin.Rnw
inst/doc/coin.pdf
inst/doc/coin_implementation.R
inst/doc/coin_implementation.Rnw
inst/doc/coin_implementation.pdf
inst/doxygen.cfg
man
man/CWD.Rd man/ContingencyTests.Rd man/CorrelationTests.Rd man/ExpectCovar-class.Rd man/ExpectCovarInfluence-class.Rd man/GTSG.Rd man/IndependenceLinearStatistic-class.Rd man/IndependenceProblem-class.Rd man/IndependenceTest-class.Rd man/IndependenceTest.Rd man/IndependenceTestProblem-class.Rd man/IndependenceTestStatistic-class.Rd man/LocationTests.Rd man/MarginalHomogeneityTests.Rd man/MaximallySelectedStatisticsTests.Rd man/NullDistribution-class.Rd man/NullDistribution-methods.Rd man/NullDistribution.Rd man/PValue-class.Rd man/PermutationDistribution-methods.Rd man/ScaleTests.Rd man/SurvivalTests.Rd man/SymmetryProblem-class.Rd man/SymmetryTest.Rd man/SymmetryTests.Rd man/Transformations.Rd man/VarCovar-class.Rd man/alpha.Rd man/alzheimer.Rd man/asat.Rd man/coin-package.Rd man/expectation-methods.Rd man/glioma.Rd man/hohnloser.Rd man/jobsatisfaction.Rd man/malformations.Rd man/mercuryfish.Rd man/neuropathy.Rd man/ocarcinoma.Rd man/photocar.Rd man/pvalue-methods.Rd man/rotarod.Rd man/statistic-methods.Rd man/treepipit.Rd man/vision.Rd
src
src/Classes.c
src/Classes.h
src/Helpers.c
src/Helpers.h
src/LinearStatistic.c
src/LinearStatistic.h
src/Makevars
src/StreitbergRoehmel.c
src/coin-init.c
src/coin-win.def
src/coin.h
src/coin_common.h
src/vandeWiel.c
tests
tests/AIDS.rda
tests/Examples
tests/Examples/coin-Ex.Rout.save
tests/FAILURE.rda
tests/LANCET.rda
tests/army.rda
tests/asthma.rda
tests/bloodp.rda
tests/bugfixes.R
tests/bugfixes.Rout.save
tests/comparisons.R
tests/comparisons.Rout.save
tests/employment.rda
tests/lungcancer.rda
tests/regtest_2sample.R
tests/regtest_2sample.Rout.save
tests/regtest_Ksample.R
tests/regtest_Ksample.Rout.save
tests/regtest_MTP.R
tests/regtest_MTP.Rout.save
tests/regtest_contingency.R
tests/regtest_contingency.Rout.save
tests/regtest_correlation.R
tests/regtest_correlation.Rout.save
tests/regtest_distribution.R
tests/regtest_distribution.Rout.save
tests/regtest_helpers.R
tests/regtest_helpers.Rout.save
tests/regtest_libcoin.R
tests/regtest_libcoin.Rout.save
tests/regtest_midpvalue.R
tests/regtest_midpvalue.Rout.save
tests/regtest_trafo.R
tests/regtest_trafo.Rout.save
vignettes
vignettes/LegoCondInf.Rnw
vignettes/LegoCondInf.Rout.save
vignettes/LegoCondInf.bib
vignettes/MAXtest.Rnw
vignettes/MAXtest.Rout.save
vignettes/coin.Rnw
vignettes/coin.Rout.save
vignettes/coin.bib
vignettes/coin_implementation.Rnw
vignettes/coin_implementation.Rout.save
vignettes/head.tex
vignettes/references.bib

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