SCOP.fa2HPMI: Annotations of SCOP domain families (fa) by Human Phenotype Mode of Inheritance (HPMI).

Description

An object of class "Anno" that contains associations between HPMI terms and SCOP domain families (fa). This data is prepared based on the dcGO database (see http://supfam.org/SUPERFAMILY/dcGO/).

Usage

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Value

an object of class Anno. It has slots for "annoData", "termData" and "domainData":

References

Fang H and Gough J. (2013) dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. Nucleic Acids Res, 41(Database issue):D536-44.

See Also

Anno-class

Examples

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# load data
data(SCOP.fa2HPMI)
SCOP.fa2HPMI
# retrieve info on ontology terms
termData(SCOP.fa2HPMI)
# retrieve info on SCOP domains
domainData(SCOP.fa2HPMI)
# retrieve the first 5 rows and columns of annotation data
x <- annoData(SCOP.fa2HPMI)[1:5,1:5]
x
# convert the above retrieval to the full matrix
as.matrix(x)

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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