API for dcGOR
Analysis of Ontologies and Protein Domain Annotations

Global functions
AdjData Man page
AdjData-class Man page
Ancestral_domainome Man page
Anno Man page
Anno-class Man page
Anno-method Man page
AnnoData Man page
AnnoData-class Man page
Cnetwork Man page
Cnetwork-class Man page
Cnetwork-method Man page
Coutput Man page
Coutput-class Man page
Coutput-method Man page
Data Man page
Data,InfoDataFrame-method Man page
Dnetwork Man page
Dnetwork-class Man page
Dnetwork-method Man page
Eoutput Man page
Eoutput-class Man page
Eoutput-method Man page
InfoDataFrame Man page
InfoDataFrame-class Man page
InfoDataFrame-method Man page
InterPro Man page
InterPro2GOBP Man page
InterPro2GOCC Man page
InterPro2GOMF Man page
Onto Man page
Onto-class Man page
Onto-method Man page
Pfam Man page
Pfam2GOBP Man page
Pfam2GOCC Man page
Pfam2GOMF Man page
Rfam Man page
Rfam2GOBP Man page
Rfam2GOCC Man page
Rfam2GOMF Man page
SCOP.fa Man page
SCOP.fa2DO Man page
SCOP.fa2GOBP Man page
SCOP.fa2GOCC Man page
SCOP.fa2GOMF Man page
SCOP.fa2HPMI Man page
SCOP.fa2HPON Man page
SCOP.fa2HPPA Man page
SCOP.fa2MP Man page
SCOP.sf Man page
SCOP.sf2DO Man page
SCOP.sf2GOBP Man page
SCOP.sf2GOCC Man page
SCOP.sf2GOMF Man page
SCOP.sf2HPMI Man page
SCOP.sf2HPON Man page
SCOP.sf2HPPA Man page
SCOP.sf2MP Man page
[,Anno,ANY,ANY,ANY-method Man page
[,Anno-method Man page
[,Cnetwork,ANY,ANY,ANY-method Man page
[,Cnetwork-method Man page
[,Dnetwork,ANY,ANY,ANY-method Man page
[,Dnetwork-method Man page
[,InfoDataFrame,ANY,ANY,ANY-method Man page
[,InfoDataFrame-method Man page
[,Onto,ANY,ANY,ANY-method Man page
[,Onto-method Man page
adjMatrix Man page
adjMatrix,Cnetwork-method Man page
adjMatrix,Dnetwork-method Man page
adjMatrix,Onto-method Man page
adjp Man page
adjp,Coutput-method Man page
adjp,Eoutput-method Man page
annoData Man page
annoData,Anno-method Man page
cnetwork Man page
cnetwork,Coutput-method Man page
colNames Man page
colNames,InfoDataFrame-method Man page
dData Man page
dData,Anno-method Man page
data.frame2InfoDataFrame Man page
dcAlgo Man page Source code
dcAlgoPredict Man page Source code
dcAlgoPredictGenome Man page Source code
dcAlgoPredictMain Man page Source code
dcAlgoPredictPR Man page Source code
dcAlgoPropagate Man page Source code
dcAncestralML Man page Source code
dcAncestralMP Man page Source code
dcBuildAnno Man page Source code
dcBuildInfoDataFrame Man page Source code
dcBuildOnto Man page Source code
dcConverter Man page Source code
dcDAGannotate Man page Source code
dcDAGdomainSim Man page Source code
dcDuplicated Man page Source code
dcEnrichment Man page Source code
dcFunArgs Man page Source code
dcList2Matrix Man page Source code
dcNaivePredict Man page Source code
dcRDataLoader Man page Source code
dcRWRpipeline Man page Source code
dcRWRpredict Man page Source code
dcSparseMatrix Man page Source code
dcSplitArch Man page Source code
dcSubtreeClade Man page Source code
dcSubtreeTips Man page Source code
dcSupraBetter Man page Source code
dcTreeConnectivity Man page Source code
description Man page
description,Dnetwork-method Man page
dgCMatrix2Anno Man page
dgCMatrix2Cnetwork Man page
dgCMatrix2Dnetwork Man page
dgCMatrix2Onto Man page
dim,Anno-method Man page
dim,Cnetwork-method Man page
dim,Dnetwork-method Man page
dim,InfoDataFrame-method Man page
dim,Onto-method Man page
dimLabels Man page
dimLabels,InfoDataFrame-method Man page
domainData Man page
domainData,Anno-method Man page
domainNames Man page
domainNames,Anno-method Man page
eTOL Man page
id Man page
id,Dnetwork-method Man page
level Man page
level,Dnetwork-method Man page
matrix2Anno Man page
matrix2Cnetwork Man page
matrix2Dnetwork Man page
matrix2Onto Man page
nInfo Man page
nInfo,Cnetwork-method Man page
nInfo,Dnetwork-method Man page
nInfo,Onto-method Man page
ncol Man page
ncol,InfoDataFrame-method Man page
nodeInfo Man page
nodeInfo,Cnetwork-method Man page
nodeInfo,Dnetwork-method Man page
nodeInfo,Onto-method Man page
nodeNames Man page
nodeNames,Cnetwork-method Man page
nodeNames,Dnetwork-method Man page
nodeNames,Onto-method Man page
nrow Man page
nrow,InfoDataFrame-method Man page
onto.DO Man page
onto.GOBP Man page
onto.GOCC Man page
onto.GOMF Man page
onto.HPMI Man page
onto.HPON Man page
onto.HPPA Man page
onto.MP Man page
pvalue Man page
pvalue,Coutput-method Man page
pvalue,Eoutput-method Man page
ratio Man page
ratio,Coutput-method Man page
rowNames Man page
rowNames,InfoDataFrame-method Man page
selectSomeIndex Source code
show,Anno-method Man page
show,Cnetwork-method Man page
show,Coutput-method Man page
show,Dnetwork-method Man page
show,Eoutput-method Man page
show,InfoDataFrame-method Man page
show,Onto-method Man page
showInfoDataFrame Source code
tData Man page
tData,Anno-method Man page
termData Man page
termData,Anno-method Man page
termNames Man page
termNames,Anno-method Man page
term_distance Man page
term_distance,Onto-method Man page
term_id Man page
term_id,Onto-method Man page
term_name Man page
term_name,Onto-method Man page
term_namespace Man page
term_namespace,Onto-method Man page
view Man page
view,Eoutput-method Man page
visEnrichment Man page Source code
wrapcat Source code
write Man page
write,Coutput-method Man page
write,Eoutput-method Man page
zscore Man page
zscore,Coutput-method Man page
zscore,Eoutput-method Man page
dcGOR documentation built on May 31, 2017, 4:44 a.m.