SCOP.sf: SCOP domain superfamilies (sf).

In dcGOR: Analysis of Ontologies and Protein Domain Annotations

Description

An object of class "InfoDataFrame" that contains information on SCOP domain superfamilies (sf).

Usage

data(SCOP.sf)

Value

an object of class InfoDataFrame. It has slots for data and dimLabels:

• data: a data.frame containing information about 2223 domains (in rows), with 3 columns ("id" for SCOP sunid, and "level" for SCOP level, "description" for SCOP description)

• dimLabels: a character describing labels for rows and columns in data

References

Morais et al. (2011) SUPERFAMILY 1.75 including a domain-centric gene ontology method. Nucleic Acids Res, 39(Database issue):D427-34.
Andreeva et al. (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res, 36(Database issue):D419-425

See Also

InfoDataFrame-class

Examples

# load data
data(SCOP.sf)
SCOP.sf
# retrieve the dimension
dim(SCOP.sf)
# retrieve names of columns
colNames(SCOP.sf)
# retrieve the first 5 rows of data
Data(SCOP.sf)[1:5,]

dcGOR documentation built on May 2, 2019, 6:14 p.m.