dcemri: A Package for Medical Image Analysis

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A collection of routines and documentation that allows one to perform a quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data. Medical imaging data should be organized using either the Analyze or NIfTI data formats.

Author
Brandon Whitcher and Volker Schmid, with contributions from Andrew Thornton
Date of publication
2011-02-23 16:15:08
Maintainer
Brandon Whitcher <bjw34032@users.sourceforge.net>
License
BSD
Version
0.10.5
URLs

View on R-Forge

Man pages

aif
Arterial Input Functions
buckley
Simulated Data from Buckley (2002)
conv_fft
Convolution of 3D Arrays using the Fourier Transform
dam
Double-Angle Method for B1+ Mapping
dce_bayes
Bayesian Methods for Pharmacokinetic Modeling of Dynamic...
dce_map
Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI...
dcemri
Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemri-package
dcemri: A Package for Medical Image Analysis
dce_spline
Bayesian P-Splines for Dynamic Contrasat-Enhanced MRI Data
dwi
Estimate the Apparent Diffusion Coefficient (ADC)
extract
Seed Growing for a 4D Array
find_center
Find the Center of a Binary Mask
flipangle
Estimate Intrinsic Tissue Relaxivity
ftm
Fast Template Matching via Cross-Correlation
hotmetal
Hot Metal Color Table
kineticmodel
Pharmacokinetic Models
miscellaneous
Dimension Accessor Functions
read
Read Headers and Binary Image Files for Medical Imaging Data
read_analyze
Read Analyze Format Headers and Binary Image Files
read_nifti
Read NIfTI Format Headers and Image Files
shift3D
Shift a 3D Array in One Dimension
tim_colors
Tim's Useful Color Table
write
Write Analyze/NIfTI Format Binary Image Files

Files in this package

dcemri
dcemri/NAMESPACE
dcemri/inst
dcemri/inst/doc
dcemri/inst/doc/SDAM_smooth.nii.gz
dcemri/inst/doc/fl3d_vibe-25deg.nii.gz
dcemri/inst/doc/SDAM_ep2d_120deg_26slc.nii.gz
dcemri/inst/doc/fl3d_vibe-10deg.nii.gz
dcemri/inst/doc/fl3d_vibe-20deg.nii.gz
dcemri/inst/doc/fl3d_vibe-5deg.nii.gz
dcemri/inst/doc/dcemri.Rnw
dcemri/inst/doc/zstat1.nii.gz
dcemri/inst/doc/t1_phantom_mask.nii.gz
dcemri/inst/doc/avg152T1_RL_nifti.nii.gz
dcemri/inst/doc/SDAM_ep2d_60deg_26slc.nii.gz
dcemri/inst/doc/filtered_func_data.nii.gz
dcemri/inst/doc/dcemri.pdf
dcemri/inst/doc/dcemri.bib
dcemri/inst/doc/avg152T1_LR_nifti.nii.gz
dcemri/inst/doc/fl3d_vibe-15deg.nii.gz
dcemri/inst/CITATION
dcemri/COPYING
dcemri/demo
dcemri/demo/zstat1.R
dcemri/demo/00Index
dcemri/demo/avg152T1_LR.R
dcemri/demo/avg152T1_RL.R
dcemri/demo/avg152T1.R
dcemri/demo/buckley.R
dcemri/demo/filtered_func_data.R
dcemri/man
dcemri/man/aif.Rd
dcemri/man/read_analyze.Rd
dcemri/man/kineticmodel.Rd
dcemri/man/miscellaneous.Rd
dcemri/man/read.Rd
dcemri/man/write.Rd
dcemri/man/dcemri-package.Rd
dcemri/man/dam.Rd
dcemri/man/ftm.Rd
dcemri/man/dce_bayes.Rd
dcemri/man/extract.Rd
dcemri/man/buckley.Rd
dcemri/man/dce_spline.Rd
dcemri/man/dce_map.Rd
dcemri/man/flipangle.Rd
dcemri/man/conv_fft.Rd
dcemri/man/tim_colors.Rd
dcemri/man/read_nifti.Rd
dcemri/man/shift3D.Rd
dcemri/man/dwi.Rd
dcemri/man/hotmetal.Rd
dcemri/man/dcemri.Rd
dcemri/man/find_center.Rd
dcemri/DESCRIPTION
dcemri/data
dcemri/data/buckley.txt.xz
dcemri/data/buckley.rda
dcemri/src
dcemri/src/zufall.h
dcemri/src/zufall.c
dcemri/src/baymri.c
dcemri/src/dcesp.c
dcemri/src/fortran.f
dcemri/src/dtrsv.f
dcemri/tests
dcemri/tests/Examples
dcemri/tests/Examples/dcemri-Ex.Rout.save
dcemri/R
dcemri/R/dcemri_spline.R
dcemri/R/zzz.R
dcemri/R/firstlib.R
dcemri/R/template_matching.R
dcemri/R/dwi.R
dcemri/R/kineticmodel.R
dcemri/R/forms.R
dcemri/R/read.R
dcemri/R/write.R
dcemri/R/dcemri_map.R
dcemri/R/flipangle.R
dcemri/R/miscellaneous.R
dcemri/R/dcemri_bayes.R
dcemri/R/aif.R
dcemri/R/tim_colors.R
dcemri/R/dcemri_lm.R
dcemri/R/hotmetal.R