dcemri: A Package for Medical Image Analysis
Version 0.10.5

A collection of routines and documentation that allows one to perform a quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data. Medical imaging data should be organized using either the Analyze or NIfTI data formats.

Browse man pages Browse package API and functions Browse package files

AuthorBrandon Whitcher and Volker Schmid, with contributions from Andrew Thornton
Date of publication2011-02-23 16:15:08
MaintainerBrandon Whitcher <bjw34032@users.sourceforge.net>
LicenseBSD
Version0.10.5
URL http://www.dcemri.org/ http://dcemri.sourceforge.net/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dcemri", repos="http://R-Forge.R-project.org")

Man pages

aif: Arterial Input Functions
buckley: Simulated Data from Buckley (2002)
conv_fft: Convolution of 3D Arrays using the Fourier Transform
dam: Double-Angle Method for B1+ Mapping
dce_bayes: Bayesian Methods for Pharmacokinetic Modeling of Dynamic...
dce_map: Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI...
dcemri: Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemri-package: dcemri: A Package for Medical Image Analysis
dce_spline: Bayesian P-Splines for Dynamic Contrasat-Enhanced MRI Data
dwi: Estimate the Apparent Diffusion Coefficient (ADC)
extract: Seed Growing for a 4D Array
find_center: Find the Center of a Binary Mask
flipangle: Estimate Intrinsic Tissue Relaxivity
ftm: Fast Template Matching via Cross-Correlation
hotmetal: Hot Metal Color Table
kineticmodel: Pharmacokinetic Models
miscellaneous: Dimension Accessor Functions
read: Read Headers and Binary Image Files for Medical Imaging Data
read_analyze: Read Analyze Format Headers and Binary Image Files
read_nifti: Read NIfTI Format Headers and Image Files
shift3D: Shift a 3D Array in One Dimension
tim_colors: Tim's Useful Color Table
write: Write Analyze/NIfTI Format Binary Image Files

Functions

ADC.fast Man page Source code
CA.fast Man page Source code
CA.fast2 Man page Source code
E10.lm Man page Source code
First.lib Source code Source code
NSLI Man page Source code
NTIM Man page Source code
R1.fast Man page Source code
R10.lm Man page Source code
adc.lm Man page Source code
aif.orton.exp Man page Source code
breast Man page
buckley Man page
conv.fft Man page Source code
dam Man page Source code
dcemri Man page
dcemri-package Man page
dcemri.bayes Man page Source code
dcemri.bayes.single Man page Source code
dcemri.lm Man page Source code
dcemri.map Man page Source code
dcemri.map.single Man page Source code
dcemri.spline Man page Source code
dcemri.spline.single Man page Source code
extract.aif Man page Source code
find.center Man page Source code
ftm Man page Source code
hotmetal Man page Source code
kineticModel Man page Source code
make.hdr Man page Source code
meningioma Man page
model.orton.exp Man page Source code
nsli Man page Source code
ntim Man page Source code
onAttach Source code
orton.exp.lm Man page Source code
read.analyze.hdr Man page Source code
read.analyze.img Man page Source code
read.hdr Man page Source code
read.img Man page Source code
read.nifti.hdr Man page Source code
read.nifti.img Man page Source code
shift3D Man page Source code
tim.colors Man page Source code
write.analyze.img Man page Source code
write.nifti.img Man page Source code

Files

NAMESPACE
inst
inst/doc
inst/doc/SDAM_smooth.nii.gz
inst/doc/fl3d_vibe-25deg.nii.gz
inst/doc/SDAM_ep2d_120deg_26slc.nii.gz
inst/doc/fl3d_vibe-10deg.nii.gz
inst/doc/fl3d_vibe-20deg.nii.gz
inst/doc/fl3d_vibe-5deg.nii.gz
inst/doc/dcemri.Rnw
inst/doc/zstat1.nii.gz
inst/doc/t1_phantom_mask.nii.gz
inst/doc/avg152T1_RL_nifti.nii.gz
inst/doc/SDAM_ep2d_60deg_26slc.nii.gz
inst/doc/filtered_func_data.nii.gz
inst/doc/dcemri.pdf
inst/doc/dcemri.bib
inst/doc/avg152T1_LR_nifti.nii.gz
inst/doc/fl3d_vibe-15deg.nii.gz
inst/CITATION
COPYING
demo
demo/zstat1.R
demo/00Index
demo/avg152T1_LR.R
demo/avg152T1_RL.R
demo/avg152T1.R
demo/buckley.R
demo/filtered_func_data.R
man
man/aif.Rd
man/read_analyze.Rd
man/kineticmodel.Rd
man/miscellaneous.Rd
man/read.Rd
man/write.Rd
man/dcemri-package.Rd
man/dam.Rd
man/ftm.Rd
man/dce_bayes.Rd
man/extract.Rd
man/buckley.Rd
man/dce_spline.Rd
man/dce_map.Rd
man/flipangle.Rd
man/conv_fft.Rd
man/tim_colors.Rd
man/read_nifti.Rd
man/shift3D.Rd
man/dwi.Rd
man/hotmetal.Rd
man/dcemri.Rd
man/find_center.Rd
DESCRIPTION
data
data/buckley.txt.xz
data/buckley.rda
src
src/zufall.h
src/zufall.c
src/baymri.c
src/dcesp.c
src/fortran.f
src/dtrsv.f
tests
tests/Examples
tests/Examples/dcemri-Ex.Rout.save
R
R/dcemri_spline.R
R/zzz.R
R/firstlib.R
R/template_matching.R
R/dwi.R
R/kineticmodel.R
R/forms.R
R/read.R
R/write.R
R/dcemri_map.R
R/flipangle.R
R/miscellaneous.R
R/dcemri_bayes.R
R/aif.R
R/tim_colors.R
R/dcemri_lm.R
R/hotmetal.R
dcemri documentation built on May 21, 2017, 1:29 a.m.