detect: Analyzing Wildlife Data with Detection Error

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The package implements models to analyze site occupancy and count data models with detection error. The package development was supported by the Alberta Biodiversity Monitoring Institute (ABMI) and the Boreal Avian Modelling (BAM) Project.

Author
Peter Solymos, Monica Moreno, Subhash R Lele
Date of publication
2014-05-16 16:57:03
Maintainer
Peter Solymos <solymos@ualberta.ca>
License
GPL-2
Version
0.3-2
URLs

View on R-Forge

Man pages

AUC
AUC ROC plot for fitted models
bootstrap
Do bootstrap and extract bootstrap results
cmulti
Conditional Multinomial Maximum Likelihood Estimation
convertEDR
Conversion between truncated and unlimited effective...
databu
Simulated example for abundance model
datocc
Simulated example for occupancy model
detect-package
Analyzing Wildlife Data with Detection Error
hbootindex
Hierarchical bootstrap indices
internals
Internal functions
load_BAM_QPAD
Load BAM QPAD parameter estimates and support functions
oven
Ovenbird abundances
svabu
Binomial-Poisson and Binomial-ZIP models with single visit
svocc
ZI Binomial model with single visit

Files in this package

detect/DESCRIPTION
detect/NAMESPACE
detect/R
detect/R/AUC.R
detect/R/AUC.svocc.R
detect/R/bootstrap.R
detect/R/bootstrap.svisit.R
detect/R/bymethod.R
detect/R/case.names.svisit.R
detect/R/checkDesign.R
detect/R/cmulti.R
detect/R/cmulti.fit.R
detect/R/cmulti.fit0.R
detect/R/cmulti2.fit.R
detect/R/coef.summary.svabu.R
detect/R/coef.summary.svocc.R
detect/R/coef.svabu.R
detect/R/coef.svocc.R
detect/R/confint.svabu.R
detect/R/confint.svocc.R
detect/R/convertEDR.R
detect/R/dFormula.R
detect/R/drop.scope.svocc.R
detect/R/drop1.svabu.R
detect/R/drop1.svocc.R
detect/R/extractAIC.svisit.R
detect/R/extractBOOT.R
detect/R/extractBOOT.svabu.R
detect/R/extractBOOT.svocc.R
detect/R/extractMLE.R
detect/R/extractMLE.svocc.R
detect/R/fitted.cmulti.R
detect/R/fitted.svabu.R
detect/R/hbootindex.R
detect/R/is.present.R
detect/R/is.present.svisit.R
detect/R/load_BAM_QPAD.R
detect/R/logLik.cmulti.R
detect/R/logLik.svisit.R
detect/R/logdmultinom.R
detect/R/model.frame.svisit.R
detect/R/model.matrix.svabu.R
detect/R/model.matrix.svocc.R
detect/R/plot.svabu.R
detect/R/predict.svabu.R
detect/R/predict.svocc.R
detect/R/predictMCMC.R
detect/R/predictMCMC.svabu.R
detect/R/print.cmulti.R
detect/R/print.summary.cmulti.R
detect/R/print.summary.svabu.R
detect/R/print.summary.svocc.R
detect/R/print.svabu.R
detect/R/print.svocc.R
detect/R/rocplot.R
detect/R/rocplot.svocc.R
detect/R/simulate.svabu.R
detect/R/simulate.svocc.R
detect/R/summary.cmulti.R
detect/R/summary.svabu.R
detect/R/summary.svocc.R
detect/R/svabu.R
detect/R/svabu.fit.R
detect/R/svabu.step.R
detect/R/svisitFormula.R
detect/R/svocc.R
detect/R/svocc.fit.R
detect/R/svocc.step.R
detect/R/terms.svisit.R
detect/R/update.formula.svisit.R
detect/R/update.svisit.R
detect/R/variable.names.svisit.R
detect/R/vcov.cmulti.R
detect/R/vcov.svabu.R
detect/R/vcov.svocc.R
detect/R/zif.R
detect/R/zzz.R
detect/data
detect/data/databu.rda
detect/data/datocc.rda
detect/data/oven.rda
detect/inst
detect/inst/ChangeLog
detect/man
detect/man/AUC.Rd
detect/man/bootstrap.Rd
detect/man/cmulti.Rd
detect/man/convertEDR.Rd
detect/man/databu.Rd
detect/man/datocc.Rd
detect/man/detect-package.Rd
detect/man/hbootindex.Rd
detect/man/internals.Rd
detect/man/load_BAM_QPAD.Rd
detect/man/oven.Rd
detect/man/svabu.Rd
detect/man/svocc.Rd