dnamatch: A procedure for large scale contamination search

A fast contamination search algorithm to search between trace samples (mixtures) and between trace samples and reference samples where the trace samples are selected within a range of time. The match statistic uses likelihood ratio (LR) calculation based on allele frequencies to create decreasing sorted table of the most likely matches. The user can select threshold for LR to assign matches and change the model to take into account drop-in/out.

AuthorOyvind Bleka
Date of publication2015-10-19 11:16:29
MaintainerOyvind Bleka <Oyvind.Bleka@fhi.no>
LicenseGPL(>=2)
Version1.0

View on R-Forge

Files in this package

dnamatch/DESCRIPTION
dnamatch/NAMESPACE
dnamatch/R
dnamatch/R/dnamatch.R
dnamatch/man
dnamatch/man/dnamatch-package.Rd dnamatch/man/dnamatch.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.