dnamatch: A procedure for large scale contamination search

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A fast contamination search algorithm to search between trace samples (mixtures) and between trace samples and reference samples where the trace samples are selected within a range of time. The match statistic uses likelihood ratio (LR) calculation based on allele frequencies to create decreasing sorted table of the most likely matches. The user can select threshold for LR to assign matches and change the model to take into account drop-in/out.

Author
Oyvind Bleka
Date of publication
2015-10-19 11:16:29
Maintainer
Oyvind Bleka <Oyvind.Bleka@fhi.no>
License
GPL(>=2)
Version
1.0

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Man pages

dnamatch
dnamatch
dnamatch-package
A procedure for large scale contamination search

Files in this package

dnamatch/DESCRIPTION
dnamatch/NAMESPACE
dnamatch/R
dnamatch/R/dnamatch.R
dnamatch/man
dnamatch/man/dnamatch-package.Rd
dnamatch/man/dnamatch.Rd