dnamatch-package: A procedure for large scale contamination search
In dnamatch: A procedure for large scale contamination search
Description
A fast contamination search algorithm to search between trace samples (mixtures) and between trace samples and reference samples where the trace samples are selected within a range of time. The match statistic uses likelihood ratio (LR) calculation based on allele frequencies to create decreasing sorted table of the most likely matches. The user can select threshold for LR to assign matches and change the model to take into account drop-in/out.
Details
Package: dnamatch
Type: Package
Version: 1.0
Date: 2015-10-19
License: GPL(>=2)
dnamatch(fn="testprover",freqfile="ESX17_Norway.csv",reffold="ansattprofiler",TAptrn="TA",SIDpat="-S",BIDpat="_BES")
Author(s)
Oyvind Bleka <[email protected]>
dnamatch documentation built on May 31, 2017, 4:04 a.m.
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Description
A fast contamination search algorithm to search between trace samples (mixtures) and between trace samples and reference samples where the trace samples are selected within a range of time. The match statistic uses likelihood ratio (LR) calculation based on allele frequencies to create decreasing sorted table of the most likely matches. The user can select threshold for LR to assign matches and change the model to take into account drop-in/out.
Details
| Package: | dnamatch |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2015-10-19 |
| License: | GPL(>=2) |
dnamatch(fn="testprover",freqfile="ESX17_Norway.csv",reffold="ansattprofiler",TAptrn="TA",SIDpat="-S",BIDpat="_BES")
Author(s)
Oyvind Bleka <[email protected]>
dnamatch documentation built on May 31, 2017, 4:04 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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