dplR: Dendrochronology Program Library in R

Perform tree-ring analyses such as detrending, chronology building, and cross dating. Read and write standard file formats used in dendrochronology.

AuthorAndy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Date of publication2016-12-19 09:53:03
MaintainerAndy Bunn <andy.bunn@wwu.edu>
LicenseGPL (>= 2)
Version1.6.5
https://r-forge.r-project.org/projects/dplr/

View on R-Forge

Man pages

anos1: Rothenburg Tree Ring Widths

bai.in: Basal Area Increment (Inside Out)

bai.out: Basal Area Increment (Outside In)

ca533: Campito Mountain Tree Ring Widths

cana157: Twisted Tree Heartrot Hill Standard Chronology

ccf.series.rwl: Cross-Correlation between a Series and a Master Chronology

chron: Build Mean Value Chronology

cms: C-Method Standardization

co021: Schulman Old Tree No. 1, Mesa Verde

combine.rwl: Combine Tree-Ring Data Sets

common.interval: Common Interval

corr.rwl.seg: Compute Correlations between Series

corr.series.seg: Compute Correlation between a Series and a Master Chronology

crn.plot: Plot a Tree-Ring Chronology

detrend: Detrend Multiple Ring-Width Series Simultaneously

detrend.series: Detrend a Ring-Width Series

dplR-package: Dendrochronology Program Library in R

ffcsaps: Smoothing Spline with User-Specified Rigidity and Frequency...

fill.internal.NA: Fill Internal NA

gini.coef: Calculate the Gini Coefficient

glk: Calculate Gleichläufigkeit

gp.d2pith: Ponderosa Pine Distance to Pith Corresponding to 'gp.rwl'

gp.dbh: Ponderosa Pine Stem Diameters and Bark Thickness ('gp.rwl')

gp.po: Ponderosa Pine Pith Offsets Corresponding to 'gp.rwl'

gp.rwl: Ponderosa Pine Ring Widths from Gus Pearson Natural Area

hanning: Hanning Filter

i.detrend: Interactively Detrend Multiple Ring-Width Series

i.detrend.series: Interactively Detrend a Ring-Width Series

insert.ring: Edit a Ring-Width Series

interseries.cor: Individual Series Correlation Against a Master Chronology

latexDate: Date Conversion to Character in LaTeX Format

latexify: Convert Character Strings for Use with LaTeX

morlet: Perform a Continuous Morlet Wavelet Transform

net: Calculate NET

plot.rwl: Plotting Rwl Objects

pointer: Calculates Pointer Years from a Group of Ring-Width Series

po.to.wc: Convert Pith Offset to Wood Completeness

powt: Power Transformation of Tree-Ring Data

print.redfit: Printing Redfit Results

print.rwl.report: Do some reporting on a RWL object

rasterPlot: Add Raster Elements to Plot

rcs: Regional Curve Standardization

read.compact: Read DPL Compact Format Ring Width File

read.crn: Read Tucson Format Chronology File

read.fh: Read Heidelberg Format Ring Width File

read.ids: Read Site-Tree-Core IDs

read.rwl: Read Ring Width File

read.tridas: Read Tree Ring Data Standard (TRiDaS) File

read.tucson: Read Tucson Format Ring Width File

redfit: Red-Noise Spectra of Time-Series

rwi.stats.running: (Running Window) Statistics on Detrended Ring-Width Series

rwl.report: Do some reporting on a RWL object

rwl.stats: Calculate Descriptive Summary Statistics on Ring-Width Series

sea: Superposed Epoch Analysis

seg.plot: Segment Plot

sens1: Calculate Mean Sensitivity

sens2: Calculate Mean Sensitivity on Series with a Trend

series.rwl.plot: Plot Series and a Master

skel.plot: Skeleton Plot

spag.plot: Spaghetti Plot

strip.rwl: Chronology Stripping by EPS

tbrm: Calculate Tukey's Biweight Robust Mean

treeMean: Calculate mean across cores in a tree

tridas.vocabulary: Browse and Check Standard TRiDaS Vocabulary

uuid.gen: UUID Generator

wa082: Hurricane Ridge, Pacific silver fir

wavelet.plot: Plot a Continuous Wavelet Transform

wc.to.po: Convert Wood Completeness to Pith Offset

write.compact: Write DPL Compact Format Ring Width File

write.crn: Write Tucson Format Chronology File

write.rwl: Write Chronology File

write.tridas: Write Tree Ring Data Standard (TRiDaS) file

write.tucson: Write Tucson Format Chronology File

xskel.ccf.plot: Skeleton Plot for Series and Master with Cross Correlation

xskel.plot: Skeleton Plot for Series and Master

Files in this package

dplR/ChangeLog
dplR/DESCRIPTION
dplR/NAMESPACE
dplR/R
dplR/R/bai.in.R dplR/R/bai.out.R dplR/R/ccf.series.rwl.R dplR/R/chron.R dplR/R/cms.R dplR/R/combine.rwl.R dplR/R/common.interval.R dplR/R/corr.rwl.seg.R dplR/R/corr.series.seg.R dplR/R/crn.plot.R dplR/R/detrend.R dplR/R/detrend.series.R dplR/R/exactmean.R dplR/R/ffcsaps.R dplR/R/fill.internal.NA.R dplR/R/gini.coef.R dplR/R/glk.R dplR/R/hanning.R dplR/R/helpers.R dplR/R/i.detrend.R dplR/R/i.detrend.series.R dplR/R/insert.ring.R dplR/R/interseries.cor.R dplR/R/latexify.R dplR/R/morlet.R dplR/R/net.R dplR/R/normalize.xdate.R dplR/R/normalize1.R dplR/R/plot.rwl.R dplR/R/pointer.R dplR/R/powt.R dplR/R/qa.xdate.R dplR/R/rasterPlot.R dplR/R/rcs.R dplR/R/read.compact.R dplR/R/read.crn.R dplR/R/read.fh.R dplR/R/read.ids.R dplR/R/read.rwl.R dplR/R/read.tridas.R dplR/R/read.tucson.R dplR/R/redfit.R dplR/R/rwi.stats.R dplR/R/rwi.stats.running.R dplR/R/rwl.report.R dplR/R/rwl.stats.R dplR/R/sea.R dplR/R/seg.plot.R dplR/R/sens1.R dplR/R/sens2.R dplR/R/series.rwl.plot.R dplR/R/simpleXML.R dplR/R/skel.plot.R dplR/R/spag.plot.R dplR/R/strip.rwl.R dplR/R/tbrm.R dplR/R/treeMean.R dplR/R/tridas.vocabulary.R dplR/R/uuid.gen.R dplR/R/wavelet.plot.R dplR/R/wc.to.po.R dplR/R/write.compact.R dplR/R/write.crn.R dplR/R/write.rwl.R dplR/R/write.tridas.R dplR/R/write.tucson.R dplR/R/xskel.ccf.plot.R dplR/R/xskel.plot.R
dplR/TODO
dplR/build
dplR/build/vignette.rds
dplR/data
dplR/data/anos1.rda
dplR/data/ca533.rda
dplR/data/cana157.rda
dplR/data/co021.rda
dplR/data/gp.d2pith.rda
dplR/data/gp.dbh.rda
dplR/data/gp.po.rda
dplR/data/gp.rwl.rda
dplR/data/wa082.rda
dplR/inst
dplR/inst/CITATION
dplR/inst/COPYRIGHTS
dplR/inst/doc
dplR/inst/doc/00_INDEX
dplR/inst/doc/build-math-dplR.R
dplR/inst/doc/chron-dplR.R
dplR/inst/doc/chron-dplR.pdf
dplR/inst/doc/intro-dplR.R
dplR/inst/doc/intro-dplR.pdf
dplR/inst/doc/math-dplR.R
dplR/inst/doc/math-dplR.Rnw.txt
dplR/inst/doc/math-dplR.bib
dplR/inst/doc/math-dplR.pdf
dplR/inst/doc/timeseries-dplR.R
dplR/inst/doc/timeseries-dplR.pdf
dplR/inst/doc/xdate-dplR.R
dplR/inst/doc/xdate-dplR.pdf
dplR/inst/po
dplR/inst/po/fi
dplR/inst/po/fi/LC_MESSAGES
dplR/inst/po/fi/LC_MESSAGES/R-dplR.mo
dplR/inst/po/fi/LC_MESSAGES/dplR.mo
dplR/man
dplR/man/anos1.Rd dplR/man/bai.in.Rd dplR/man/bai.out.Rd dplR/man/ca533.Rd dplR/man/cana157.Rd dplR/man/ccf.series.rwl.Rd dplR/man/chron.Rd dplR/man/cms.Rd dplR/man/co021.Rd dplR/man/combine.rwl.Rd dplR/man/common.interval.Rd dplR/man/corr.rwl.seg.Rd dplR/man/corr.series.seg.Rd dplR/man/crn.plot.Rd dplR/man/detrend.Rd dplR/man/detrend.series.Rd dplR/man/dplR-package.Rd dplR/man/ffcsaps.Rd dplR/man/fill.internal.NA.Rd dplR/man/gini.coef.Rd dplR/man/glk.Rd dplR/man/gp.d2pith.Rd dplR/man/gp.dbh.Rd dplR/man/gp.po.Rd dplR/man/gp.rwl.Rd dplR/man/hanning.Rd dplR/man/i.detrend.Rd dplR/man/i.detrend.series.Rd dplR/man/insert.ring.Rd dplR/man/interseries.cor.Rd dplR/man/latexDate.Rd dplR/man/latexify.Rd dplR/man/morlet.Rd dplR/man/net.Rd dplR/man/plot.rwl.Rd dplR/man/po.to.wc.Rd dplR/man/pointer.Rd dplR/man/powt.Rd dplR/man/print.redfit.Rd dplR/man/print.rwl.report.Rd dplR/man/rasterPlot.Rd dplR/man/rcs.Rd dplR/man/read.compact.Rd dplR/man/read.crn.Rd dplR/man/read.fh.Rd dplR/man/read.ids.Rd dplR/man/read.rwl.Rd dplR/man/read.tridas.Rd dplR/man/read.tucson.Rd dplR/man/redfit.Rd dplR/man/rwi.stats.running.Rd dplR/man/rwl.report.Rd dplR/man/rwl.stats.Rd dplR/man/sea.Rd dplR/man/seg.plot.Rd dplR/man/sens1.Rd dplR/man/sens2.Rd dplR/man/series.rwl.plot.Rd dplR/man/skel.plot.Rd dplR/man/spag.plot.Rd dplR/man/strip.rwl.Rd dplR/man/tbrm.Rd dplR/man/treeMean.Rd dplR/man/tridas.vocabulary.Rd dplR/man/uuid.gen.Rd dplR/man/wa082.Rd dplR/man/wavelet.plot.Rd dplR/man/wc.to.po.Rd dplR/man/write.compact.Rd dplR/man/write.crn.Rd dplR/man/write.rwl.Rd dplR/man/write.tridas.Rd dplR/man/write.tucson.Rd dplR/man/xskel.ccf.plot.Rd dplR/man/xskel.plot.Rd
dplR/po
dplR/po/R-dplR.pot
dplR/po/R-fi.po
dplR/po/dplR.pot
dplR/po/fi.po
dplR/src
dplR/src/dplR.c
dplR/src/dplR.h
dplR/src/exactmean.c
dplR/src/exactsum.c
dplR/src/exactsum.h
dplR/src/gini.c
dplR/src/rcompact.c
dplR/src/readloop.c
dplR/src/redfit.c
dplR/src/sens.c
dplR/src/tbrm.c
dplR/tests
dplR/tests/testthat
dplR/tests/testthat.R
dplR/tests/testthat/test-chron.R
dplR/tests/testthat/test-dplR.R
dplR/tests/testthat/test-io.R
dplR/tests/testthat/test-utils.R
dplR/vignettes
dplR/vignettes/chron-dplR.Rnw
dplR/vignettes/dplR.bib
dplR/vignettes/dplR.sty
dplR/vignettes/intro-dplR.Rnw
dplR/vignettes/timeseries-dplR.Rnw
dplR/vignettes/xdate-dplR.Rnw

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