dplR: Dendrochronology Program Library in R

Perform tree-ring analyses such as detrending, chronology building, and cross dating. Read and write standard file formats used in dendrochronology.

AuthorAndy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Date of publication2017-04-06 09:28:35
MaintainerAndy Bunn <andy.bunn@wwu.edu>
LicenseGPL (>= 2)
Version1.6.6
https://r-forge.r-project.org/projects/dplr/

View on R-Forge

Man pages

anos1: Rothenburg Tree Ring Widths

bai.in: Basal Area Increment (Inside Out)

bai.out: Basal Area Increment (Outside In)

ca533: Campito Mountain Tree Ring Widths

cana157: Twisted Tree Heartrot Hill Standard Chronology

ccf.series.rwl: Cross-Correlation between a Series and a Master Chronology

chron: Build Mean Value Chronology

cms: C-Method Standardization

co021: Schulman Old Tree No. 1, Mesa Verde

combine.rwl: Combine Tree-Ring Data Sets

common.interval: Common Interval

corr.rwl.seg: Compute Correlations between Series

corr.series.seg: Compute Correlation between a Series and a Master Chronology

crn.plot: Plot a Tree-Ring Chronology

detrend: Detrend Multiple Ring-Width Series Simultaneously

detrend.series: Detrend a Ring-Width Series

dplR-package: Dendrochronology Program Library in R

ffcsaps: Smoothing Spline with User-Specified Rigidity and Frequency...

fill.internal.NA: Fill Internal NA

gini.coef: Calculate the Gini Coefficient

glk: Calculate Gleichläufigkeit

gp.d2pith: Ponderosa Pine Distance to Pith Corresponding to 'gp.rwl'

gp.dbh: Ponderosa Pine Stem Diameters and Bark Thickness ('gp.rwl')

gp.po: Ponderosa Pine Pith Offsets Corresponding to 'gp.rwl'

gp.rwl: Ponderosa Pine Ring Widths from Gus Pearson Natural Area

hanning: Hanning Filter

i.detrend: Interactively Detrend Multiple Ring-Width Series

i.detrend.series: Interactively Detrend a Ring-Width Series

insert.ring: Edit a Ring-Width Series

interseries.cor: Individual Series Correlation Against a Master Chronology

latexDate: Date Conversion to Character in LaTeX Format

latexify: Convert Character Strings for Use with LaTeX

morlet: Perform a Continuous Morlet Wavelet Transform

net: Calculate NET

plot.rwl: Plotting Rwl Objects

pointer: Calculates Pointer Years from a Group of Ring-Width Series

po.to.wc: Convert Pith Offset to Wood Completeness

powt: Power Transformation of Tree-Ring Data

print.redfit: Printing Redfit Results

print.rwl.report: Do some reporting on a RWL object

rasterPlot: Add Raster Elements to Plot

rcs: Regional Curve Standardization

read.compact: Read DPL Compact Format Ring Width File

read.crn: Read Tucson Format Chronology File

read.fh: Read Heidelberg Format Ring Width File

read.ids: Read Site-Tree-Core IDs

read.rwl: Read Ring Width File

read.tridas: Read Tree Ring Data Standard (TRiDaS) File

read.tucson: Read Tucson Format Ring Width File

redfit: Red-Noise Spectra of Time-Series

rwi.stats.running: (Running Window) Statistics on Detrended Ring-Width Series

rwl.report: Do some reporting on a RWL object

rwl.stats: Calculate Descriptive Summary Statistics on Ring-Width Series

sea: Superposed Epoch Analysis

seg.plot: Segment Plot

sens1: Calculate Mean Sensitivity

sens2: Calculate Mean Sensitivity on Series with a Trend

series.rwl.plot: Plot Series and a Master

sfrcs: Signal-Free Regional Curve Standardization

skel.plot: Skeleton Plot

spag.plot: Spaghetti Plot

strip.rwl: Chronology Stripping by EPS

tbrm: Calculate Tukey's Biweight Robust Mean

treeMean: Calculate mean across cores in a tree

tridas.vocabulary: Browse and Check Standard TRiDaS Vocabulary

uuid.gen: UUID Generator

wa082: Hurricane Ridge, Pacific silver fir

wavelet.plot: Plot a Continuous Wavelet Transform

wc.to.po: Convert Wood Completeness to Pith Offset

write.compact: Write DPL Compact Format Ring Width File

write.crn: Write Tucson Format Chronology File

write.rwl: Write Chronology File

write.tridas: Write Tree Ring Data Standard (TRiDaS) file

write.tucson: Write Tucson Format Chronology File

xskel.ccf.plot: Skeleton Plot for Series and Master with Cross Correlation

xskel.plot: Skeleton Plot for Series and Master

Functions

anos1 Man page
autoread.ids Man page
bai.in Man page
bai.out Man page
ca533 Man page
cana157 Man page
ccf.series.rwl Man page
chron Man page
cms Man page
co021 Man page
combine.rwl Man page
common.interval Man page
corr.rwl.seg Man page
corr.series.seg Man page
crn.plot Man page
delete.ring Man page
detrend Man page
detrend.series Man page
dplR Man page
dplR-package Man page
ffcsaps Man page
fill.internal.NA Man page
gini.coef Man page
glk Man page
gp.d2pith Man page
gp.dbh Man page
gp.po Man page
gp.rwl Man page
hanning Man page
i.detrend Man page
i.detrend.series Man page
insert.ring Man page
interseries.cor Man page
latexDate Man page
latexify Man page
morlet Man page
net Man page
plot.crn Man page
plot.rwl Man page
pointer Man page
po.to.wc Man page
powt Man page
print.redfit Man page
print.rwl.report Man page
rasterPlot Man page
rcs Man page
read.compact Man page
read.crn Man page
read.fh Man page
read.ids Man page
read.rwl Man page
read.tridas Man page
read.tucson Man page
redfit Man page
runcrit Man page
rwi.stats Man page
rwi.stats.legacy Man page
rwi.stats.running Man page
rwl.report Man page
rwl.stats Man page
sea Man page
seg.plot Man page
sens1 Man page
sens2 Man page
series.rwl.plot Man page
sfrcs Man page
skel.plot Man page
spag.plot Man page
strip.rwl Man page
summary.rwl Man page
tbrm Man page
treeMean Man page
tridas.vocabulary Man page
uuid.gen Man page
wa082 Man page
wavelet.plot Man page
wc.to.po Man page
write.compact Man page
write.crn Man page
write.rwl Man page
write.tridas Man page
write.tucson Man page
xskel.ccf.plot Man page
xskel.plot Man page

Files

ChangeLog
DESCRIPTION
NAMESPACE
R
R/bai.in.R R/bai.out.R R/ccf.series.rwl.R R/chron.R R/cms.R R/combine.rwl.R R/common.interval.R R/corr.rwl.seg.R R/corr.series.seg.R R/crn.plot.R R/detrend.R R/detrend.series.R R/exactmean.R R/ffcsaps.R R/fill.internal.NA.R R/gini.coef.R R/glk.R R/hanning.R R/helpers.R R/i.detrend.R R/i.detrend.series.R R/insert.ring.R R/interseries.cor.R R/latexify.R R/morlet.R R/net.R R/normalize.xdate.R R/normalize1.R R/plot.rwl.R R/pointer.R R/powt.R R/qa.xdate.R R/rasterPlot.R R/rcs.R R/read.compact.R R/read.crn.R R/read.fh.R R/read.ids.R R/read.rwl.R R/read.tridas.R R/read.tucson.R R/redfit.R R/rwi.stats.R R/rwi.stats.running.R R/rwl.report.R R/rwl.stats.R R/sea.R R/seg.plot.R R/sens1.R R/sens2.R R/series.rwl.plot.R R/sfrcs.R R/simpleXML.R R/skel.plot.R R/spag.plot.R R/strip.rwl.R R/tbrm.R R/treeMean.R R/tridas.vocabulary.R R/uuid.gen.R R/wavelet.plot.R R/wc.to.po.R R/write.compact.R R/write.crn.R R/write.rwl.R R/write.tridas.R R/write.tucson.R R/xskel.ccf.plot.R R/xskel.plot.R R/zzz.R
TODO
build
build/vignette.rds
data
data/anos1.rda
data/ca533.rda
data/cana157.rda
data/co021.rda
data/gp.d2pith.rda
data/gp.dbh.rda
data/gp.po.rda
data/gp.rwl.rda
data/wa082.rda
inst
inst/CITATION
inst/COPYRIGHTS
inst/doc
inst/doc/00_INDEX
inst/doc/build-math-dplR.R inst/doc/chron-dplR.R
inst/doc/chron-dplR.pdf
inst/doc/intro-dplR.R
inst/doc/intro-dplR.pdf
inst/doc/math-dplR.R
inst/doc/math-dplR.Rnw.txt
inst/doc/math-dplR.bib
inst/doc/math-dplR.pdf
inst/doc/timeseries-dplR.R
inst/doc/timeseries-dplR.pdf
inst/doc/xdate-dplR.R
inst/doc/xdate-dplR.pdf
inst/po
inst/po/fi
inst/po/fi/LC_MESSAGES
inst/po/fi/LC_MESSAGES/R-dplR.mo
inst/po/fi/LC_MESSAGES/dplR.mo
man
man/anos1.Rd man/bai.in.Rd man/bai.out.Rd man/ca533.Rd man/cana157.Rd man/ccf.series.rwl.Rd man/chron.Rd man/cms.Rd man/co021.Rd man/combine.rwl.Rd man/common.interval.Rd man/corr.rwl.seg.Rd man/corr.series.seg.Rd man/crn.plot.Rd man/detrend.Rd man/detrend.series.Rd man/dplR-package.Rd man/ffcsaps.Rd man/fill.internal.NA.Rd man/gini.coef.Rd man/glk.Rd man/gp.d2pith.Rd man/gp.dbh.Rd man/gp.po.Rd man/gp.rwl.Rd man/hanning.Rd man/i.detrend.Rd man/i.detrend.series.Rd man/insert.ring.Rd man/interseries.cor.Rd man/latexDate.Rd man/latexify.Rd man/morlet.Rd man/net.Rd man/plot.rwl.Rd man/po.to.wc.Rd man/pointer.Rd man/powt.Rd man/print.redfit.Rd man/print.rwl.report.Rd man/rasterPlot.Rd man/rcs.Rd man/read.compact.Rd man/read.crn.Rd man/read.fh.Rd man/read.ids.Rd man/read.rwl.Rd man/read.tridas.Rd man/read.tucson.Rd man/redfit.Rd man/rwi.stats.running.Rd man/rwl.report.Rd man/rwl.stats.Rd man/sea.Rd man/seg.plot.Rd man/sens1.Rd man/sens2.Rd man/series.rwl.plot.Rd man/sfrcs.Rd man/skel.plot.Rd man/spag.plot.Rd man/strip.rwl.Rd man/tbrm.Rd man/treeMean.Rd man/tridas.vocabulary.Rd man/uuid.gen.Rd man/wa082.Rd man/wavelet.plot.Rd man/wc.to.po.Rd man/write.compact.Rd man/write.crn.Rd man/write.rwl.Rd man/write.tridas.Rd man/write.tucson.Rd man/xskel.ccf.plot.Rd man/xskel.plot.Rd
po
po/R-dplR.pot
po/R-fi.po
po/dplR.pot
po/fi.po
src
src/Makevars
src/dplR-win.def
src/dplR.c
src/dplR.h
src/exactmean.c
src/exactsum.c
src/exactsum.h
src/gini.c
src/init.c
src/rcompact.c
src/readloop.c
src/redfit.c
src/registered.h
src/sens.c
src/tbrm.c
tests
tests/testthat
tests/testthat.R tests/testthat/test-chron.R tests/testthat/test-dplR.R tests/testthat/test-io.R tests/testthat/test-utils.R
vignettes
vignettes/chron-dplR.Rnw
vignettes/dplR.bib
vignettes/dplR.sty
vignettes/intro-dplR.Rnw
vignettes/timeseries-dplR.Rnw
vignettes/xdate-dplR.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.