dplR: Dendrochronology Program Library in R

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Perform tree-ring analyses such as detrending, chronology building, and cross dating. Read and write standard file formats used in dendrochronology.

Author
Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb]
Date of publication
2016-11-28 10:51:21
Maintainer
Andy Bunn <andy.bunn@wwu.edu>
License
GPL (>= 2)
Version
1.6.5
URLs

View on R-Forge

Man pages

anos1
Rothenburg Tree Ring Widths
bai.in
Basal Area Increment (Inside Out)
bai.out
Basal Area Increment (Outside In)
ca533
Campito Mountain Tree Ring Widths
cana157
Twisted Tree Heartrot Hill Standard Chronology
ccf.series.rwl
Cross-Correlation between a Series and a Master Chronology
chron
Build Mean Value Chronology
cms
C-Method Standardization
co021
Schulman Old Tree No. 1, Mesa Verde
combine.rwl
Combine Tree-Ring Data Sets
common.interval
Common Interval
corr.rwl.seg
Compute Correlations between Series
corr.series.seg
Compute Correlation between a Series and a Master Chronology
crn.plot
Plot a Tree-Ring Chronology
detrend
Detrend Multiple Ring-Width Series Simultaneously
detrend.series
Detrend a Ring-Width Series
dplR-package
Dendrochronology Program Library in R
ffcsaps
Smoothing Spline with User-Specified Rigidity and Frequency...
fill.internal.NA
Fill Internal NA
gini.coef
Calculate the Gini Coefficient
glk
Calculate Gleichläufigkeit
gp.d2pith
Ponderosa Pine Distance to Pith Corresponding to 'gp.rwl'
gp.dbh
Ponderosa Pine Stem Diameters and Bark Thickness ('gp.rwl')
gp.po
Ponderosa Pine Pith Offsets Corresponding to 'gp.rwl'
gp.rwl
Ponderosa Pine Ring Widths from Gus Pearson Natural Area
hanning
Hanning Filter
i.detrend
Interactively Detrend Multiple Ring-Width Series
i.detrend.series
Interactively Detrend a Ring-Width Series
insert.ring
Edit a Ring-Width Series
interseries.cor
Individual Series Correlation Against a Master Chronology
latexDate
Date Conversion to Character in LaTeX Format
latexify
Convert Character Strings for Use with LaTeX
morlet
Perform a Continuous Morlet Wavelet Transform
net
Calculate NET
plot.rwl
Plotting Rwl Objects
pointer
Calculates Pointer Years from a Group of Ring-Width Series
po.to.wc
Convert Pith Offset to Wood Completeness
powt
Power Transformation of Tree-Ring Data
print.redfit
Printing Redfit Results
print.rwl.report
Do some reporting on a RWL object
rasterPlot
Add Raster Elements to Plot
rcs
Regional Curve Standardization
read.compact
Read DPL Compact Format Ring Width File
read.crn
Read Tucson Format Chronology File
read.fh
Read Heidelberg Format Ring Width File
read.ids
Read Site-Tree-Core IDs
read.rwl
Read Ring Width File
read.tridas
Read Tree Ring Data Standard (TRiDaS) File
read.tucson
Read Tucson Format Ring Width File
redfit
Red-Noise Spectra of Time-Series
rwi.stats.running
(Running Window) Statistics on Detrended Ring-Width Series
rwl.report
Do some reporting on a RWL object
rwl.stats
Calculate Descriptive Summary Statistics on Ring-Width Series
sea
Superposed Epoch Analysis
seg.plot
Segment Plot
sens1
Calculate Mean Sensitivity
sens2
Calculate Mean Sensitivity on Series with a Trend
series.rwl.plot
Plot Series and a Master
skel.plot
Skeleton Plot
spag.plot
Spaghetti Plot
strip.rwl
Chronology Stripping by EPS
tbrm
Calculate Tukey's Biweight Robust Mean
treeMean
Calculate mean across cores in a tree
tridas.vocabulary
Browse and Check Standard TRiDaS Vocabulary
uuid.gen
UUID Generator
wa082
Hurricane Ridge, Pacific silver fir
wavelet.plot
Plot a Continuous Wavelet Transform
wc.to.po
Convert Wood Completeness to Pith Offset
write.compact
Write DPL Compact Format Ring Width File
write.crn
Write Tucson Format Chronology File
write.rwl
Write Chronology File
write.tridas
Write Tree Ring Data Standard (TRiDaS) file
write.tucson
Write Tucson Format Chronology File
xskel.ccf.plot
Skeleton Plot for Series and Master with Cross Correlation
xskel.plot
Skeleton Plot for Series and Master

Files in this package

dplR/ChangeLog
dplR/DESCRIPTION
dplR/NAMESPACE
dplR/R
dplR/R/bai.in.R
dplR/R/bai.out.R
dplR/R/ccf.series.rwl.R
dplR/R/chron.R
dplR/R/cms.R
dplR/R/combine.rwl.R
dplR/R/common.interval.R
dplR/R/corr.rwl.seg.R
dplR/R/corr.series.seg.R
dplR/R/crn.plot.R
dplR/R/detrend.R
dplR/R/detrend.series.R
dplR/R/exactmean.R
dplR/R/ffcsaps.R
dplR/R/fill.internal.NA.R
dplR/R/gini.coef.R
dplR/R/glk.R
dplR/R/hanning.R
dplR/R/helpers.R
dplR/R/i.detrend.R
dplR/R/i.detrend.series.R
dplR/R/insert.ring.R
dplR/R/interseries.cor.R
dplR/R/latexify.R
dplR/R/morlet.R
dplR/R/net.R
dplR/R/normalize.xdate.R
dplR/R/normalize1.R
dplR/R/plot.rwl.R
dplR/R/pointer.R
dplR/R/powt.R
dplR/R/qa.xdate.R
dplR/R/rasterPlot.R
dplR/R/rcs.R
dplR/R/read.compact.R
dplR/R/read.crn.R
dplR/R/read.fh.R
dplR/R/read.ids.R
dplR/R/read.rwl.R
dplR/R/read.tridas.R
dplR/R/read.tucson.R
dplR/R/redfit.R
dplR/R/rwi.stats.R
dplR/R/rwi.stats.running.R
dplR/R/rwl.report.R
dplR/R/rwl.stats.R
dplR/R/sea.R
dplR/R/seg.plot.R
dplR/R/sens1.R
dplR/R/sens2.R
dplR/R/series.rwl.plot.R
dplR/R/simpleXML.R
dplR/R/skel.plot.R
dplR/R/spag.plot.R
dplR/R/strip.rwl.R
dplR/R/tbrm.R
dplR/R/treeMean.R
dplR/R/tridas.vocabulary.R
dplR/R/uuid.gen.R
dplR/R/wavelet.plot.R
dplR/R/wc.to.po.R
dplR/R/write.compact.R
dplR/R/write.crn.R
dplR/R/write.rwl.R
dplR/R/write.tridas.R
dplR/R/write.tucson.R
dplR/R/xskel.ccf.plot.R
dplR/R/xskel.plot.R
dplR/TODO
dplR/build
dplR/build/vignette.rds
dplR/data
dplR/data/anos1.rda
dplR/data/ca533.rda
dplR/data/cana157.rda
dplR/data/co021.rda
dplR/data/gp.d2pith.rda
dplR/data/gp.dbh.rda
dplR/data/gp.po.rda
dplR/data/gp.rwl.rda
dplR/data/wa082.rda
dplR/inst
dplR/inst/CITATION
dplR/inst/COPYRIGHTS
dplR/inst/doc
dplR/inst/doc/00_INDEX
dplR/inst/doc/build-math-dplR.R
dplR/inst/doc/chron-dplR.R
dplR/inst/doc/chron-dplR.pdf
dplR/inst/doc/intro-dplR.R
dplR/inst/doc/intro-dplR.pdf
dplR/inst/doc/math-dplR.R
dplR/inst/doc/math-dplR.Rnw.txt
dplR/inst/doc/math-dplR.bib
dplR/inst/doc/math-dplR.pdf
dplR/inst/doc/timeseries-dplR.R
dplR/inst/doc/timeseries-dplR.pdf
dplR/inst/doc/xdate-dplR.R
dplR/inst/doc/xdate-dplR.pdf
dplR/inst/po
dplR/inst/po/fi
dplR/inst/po/fi/LC_MESSAGES
dplR/inst/po/fi/LC_MESSAGES/R-dplR.mo
dplR/inst/po/fi/LC_MESSAGES/dplR.mo
dplR/man
dplR/man/anos1.Rd
dplR/man/bai.in.Rd
dplR/man/bai.out.Rd
dplR/man/ca533.Rd
dplR/man/cana157.Rd
dplR/man/ccf.series.rwl.Rd
dplR/man/chron.Rd
dplR/man/cms.Rd
dplR/man/co021.Rd
dplR/man/combine.rwl.Rd
dplR/man/common.interval.Rd
dplR/man/corr.rwl.seg.Rd
dplR/man/corr.series.seg.Rd
dplR/man/crn.plot.Rd
dplR/man/detrend.Rd
dplR/man/detrend.series.Rd
dplR/man/dplR-package.Rd
dplR/man/ffcsaps.Rd
dplR/man/fill.internal.NA.Rd
dplR/man/gini.coef.Rd
dplR/man/glk.Rd
dplR/man/gp.d2pith.Rd
dplR/man/gp.dbh.Rd
dplR/man/gp.po.Rd
dplR/man/gp.rwl.Rd
dplR/man/hanning.Rd
dplR/man/i.detrend.Rd
dplR/man/i.detrend.series.Rd
dplR/man/insert.ring.Rd
dplR/man/interseries.cor.Rd
dplR/man/latexDate.Rd
dplR/man/latexify.Rd
dplR/man/morlet.Rd
dplR/man/net.Rd
dplR/man/plot.rwl.Rd
dplR/man/po.to.wc.Rd
dplR/man/pointer.Rd
dplR/man/powt.Rd
dplR/man/print.redfit.Rd
dplR/man/print.rwl.report.Rd
dplR/man/rasterPlot.Rd
dplR/man/rcs.Rd
dplR/man/read.compact.Rd
dplR/man/read.crn.Rd
dplR/man/read.fh.Rd
dplR/man/read.ids.Rd
dplR/man/read.rwl.Rd
dplR/man/read.tridas.Rd
dplR/man/read.tucson.Rd
dplR/man/redfit.Rd
dplR/man/rwi.stats.running.Rd
dplR/man/rwl.report.Rd
dplR/man/rwl.stats.Rd
dplR/man/sea.Rd
dplR/man/seg.plot.Rd
dplR/man/sens1.Rd
dplR/man/sens2.Rd
dplR/man/series.rwl.plot.Rd
dplR/man/skel.plot.Rd
dplR/man/spag.plot.Rd
dplR/man/strip.rwl.Rd
dplR/man/tbrm.Rd
dplR/man/treeMean.Rd
dplR/man/tridas.vocabulary.Rd
dplR/man/uuid.gen.Rd
dplR/man/wa082.Rd
dplR/man/wavelet.plot.Rd
dplR/man/wc.to.po.Rd
dplR/man/write.compact.Rd
dplR/man/write.crn.Rd
dplR/man/write.rwl.Rd
dplR/man/write.tridas.Rd
dplR/man/write.tucson.Rd
dplR/man/xskel.ccf.plot.Rd
dplR/man/xskel.plot.Rd
dplR/po
dplR/po/R-dplR.pot
dplR/po/R-fi.po
dplR/po/dplR.pot
dplR/po/fi.po
dplR/src
dplR/src/dplR.c
dplR/src/dplR.h
dplR/src/exactmean.c
dplR/src/exactsum.c
dplR/src/exactsum.h
dplR/src/gini.c
dplR/src/rcompact.c
dplR/src/readloop.c
dplR/src/redfit.c
dplR/src/sens.c
dplR/src/tbrm.c
dplR/tests
dplR/tests/testthat
dplR/tests/testthat.R
dplR/tests/testthat/test-chron.R
dplR/tests/testthat/test-dplR.R
dplR/tests/testthat/test-io.R
dplR/tests/testthat/test-utils.R
dplR/vignettes
dplR/vignettes/chron-dplR.Rnw
dplR/vignettes/dplR.bib
dplR/vignettes/dplR.sty
dplR/vignettes/intro-dplR.Rnw
dplR/vignettes/timeseries-dplR.Rnw
dplR/vignettes/xdate-dplR.Rnw