gammadnamix: Package for intepretation of quantitative DNA mixtures

gammadnamix contains procedures for maximization, integration and MCMC of likelihoods of a continuous model for replicated STR DNA mixtures for a general specifications of hypotheses. It also does deconvolution condition on the continuous model. The continuous model takes care of drop-out, drop-in, stutters and degradation. It also contains the graphical layer EuroForMix.

Author
Oyvind Bleka <Oyvind.Bleka@fhi.no>
Date of publication
2015-04-15 14:36:27
Maintainer
Oyvind Bleka <Oyvind.Bleka@fhi.no>
License
GPL(>=2)
Version
0.9.5

View on R-Forge

Man pages

combineRank
combineRank
contLikINT
contLikINT
contLikMCMC
contLikMCMC
contLikMLE
contLikMLE
deconvolve
deconvolve
efm
efm
exactMACdistr
exactMACdistr
genDataset
genDataset
getGlist
getGlist
getKit
getKit
iszerolik
iszerolik
logLiki
logLiki
noncontrMLE
noncontrMLE
plotEPG
plotEPG
prepareC
prepareC
Qassignate
Qassignate
simDOdistr
simDOdistr
validMCMC
validMCMC
validMLEmodel
validMLEmodel

Files in this package

gammadnamix/DESCRIPTION
gammadnamix/NAMESPACE
gammadnamix/R
gammadnamix/R/Qassignate.R
gammadnamix/R/combineRank.R
gammadnamix/R/contLikINT.R
gammadnamix/R/contLikMCMC.R
gammadnamix/R/contLikMLE.R
gammadnamix/R/deconvolve.R
gammadnamix/R/efm.R
gammadnamix/R/exactMACdistr.R
gammadnamix/R/genDataset.R
gammadnamix/R/getGlist.R
gammadnamix/R/getKit.R
gammadnamix/R/iszerolik.R
gammadnamix/R/logLiki.R
gammadnamix/R/noncontrMLE.R
gammadnamix/R/plotEPG.R
gammadnamix/R/prepareC.R
gammadnamix/R/simDOdistr.R
gammadnamix/R/validMCMC.R
gammadnamix/R/validMLEmodel.R
gammadnamix/inst
gammadnamix/inst/CowellMC15Example.R
gammadnamix/inst/extdata
gammadnamix/inst/extdata/kit.txt
gammadnamix/inst/mcData.Rdata
gammadnamix/inst/packageExample.R
gammadnamix/inst/tutorialdata
gammadnamix/inst/tutorialdata/FreqDatabases
gammadnamix/inst/tutorialdata/FreqDatabases/ESX17_Norway.csv
gammadnamix/inst/tutorialdata/FreqDatabases/Identifiler_Caucasian.csv
gammadnamix/inst/tutorialdata/FreqDatabases/Identifiler_NIST.csv
gammadnamix/inst/tutorialdata/FreqDatabases/NGM_Holland.csv
gammadnamix/inst/tutorialdata/FreqDatabases/SGMPlus_Norway.csv
gammadnamix/inst/tutorialdata/FreqDatabases/SGMPlus_UK.csv
gammadnamix/inst/tutorialdata/FreqDatabases/SGM_German.csv
gammadnamix/inst/tutorialdata/databaseESX17.txt
gammadnamix/inst/tutorialdata/refs.csv
gammadnamix/inst/tutorialdata/stain.txt
gammadnamix/man
gammadnamix/man/Qassignate.Rd
gammadnamix/man/combineRank.Rd
gammadnamix/man/contLikINT.Rd
gammadnamix/man/contLikMCMC.Rd
gammadnamix/man/contLikMLE.Rd
gammadnamix/man/deconvolve.Rd
gammadnamix/man/efm.Rd
gammadnamix/man/exactMACdistr.Rd
gammadnamix/man/genDataset.Rd
gammadnamix/man/getGlist.Rd
gammadnamix/man/getKit.Rd
gammadnamix/man/iszerolik.Rd
gammadnamix/man/logLiki.Rd
gammadnamix/man/noncontrMLE.Rd
gammadnamix/man/plotEPG.Rd
gammadnamix/man/prepareC.Rd
gammadnamix/man/simDOdistr.Rd
gammadnamix/man/validMCMC.Rd
gammadnamix/man/validMLEmodel.Rd
gammadnamix/src
gammadnamix/src/Makevars
gammadnamix/src/Makevars.win
gammadnamix/src/loglikgamma.cpp