gammadnamix: Package for intepretation of quantitative DNA mixtures
Version 0.9.5

gammadnamix contains procedures for maximization, integration and MCMC of likelihoods of a continuous model for replicated STR DNA mixtures for a general specifications of hypotheses. It also does deconvolution condition on the continuous model. The continuous model takes care of drop-out, drop-in, stutters and degradation. It also contains the graphical layer EuroForMix.

Browse man pages Browse package API and functions Browse package files

AuthorOyvind Bleka <Oyvind.Bleka@fhi.no>
Date of publication2015-04-15 14:36:27
MaintainerOyvind Bleka <Oyvind.Bleka@fhi.no>
LicenseGPL(>=2)
Version0.9.5
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gammadnamix", repos="http://R-Forge.R-project.org")

Man pages

combineRank: combineRank
contLikINT: contLikINT
contLikMCMC: contLikMCMC
contLikMLE: contLikMLE
deconvolve: deconvolve
efm: efm
exactMACdistr: exactMACdistr
genDataset: genDataset
getGlist: getGlist
getKit: getKit
iszerolik: iszerolik
logLiki: logLiki
noncontrMLE: noncontrMLE
plotEPG: plotEPG
prepareC: prepareC
Qassignate: Qassignate
simDOdistr: simDOdistr
validMCMC: validMCMC
validMLEmodel: validMLEmodel

Functions

Qassignate Man page Source code
combineRank Man page Source code
contLikINT Man page Source code
contLikMCMC Man page Source code
contLikMLE Man page Source code
deconvolve Man page Source code
efm Man page Source code
exactMACdistr Man page Source code
genDataset Man page Source code
getGlist Man page Source code
getKit Man page Source code
iszerolik Man page Source code
logLiki Man page Source code
noncontrMLE Man page Source code
plotEPG Man page Source code
prepareC Man page Source code
simDOdistr Man page Source code
validMCMC Man page Source code
validMLEmodel Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/Qassignate.R
R/combineRank.R
R/contLikINT.R
R/contLikMCMC.R
R/contLikMLE.R
R/deconvolve.R
R/efm.R
R/exactMACdistr.R
R/genDataset.R
R/getGlist.R
R/getKit.R
R/iszerolik.R
R/logLiki.R
R/noncontrMLE.R
R/plotEPG.R
R/prepareC.R
R/simDOdistr.R
R/validMCMC.R
R/validMLEmodel.R
inst
inst/CowellMC15Example.R
inst/extdata
inst/extdata/kit.txt
inst/mcData.Rdata
inst/packageExample.R
inst/tutorialdata
inst/tutorialdata/FreqDatabases
inst/tutorialdata/FreqDatabases/ESX17_Norway.csv
inst/tutorialdata/FreqDatabases/Identifiler_Caucasian.csv
inst/tutorialdata/FreqDatabases/Identifiler_NIST.csv
inst/tutorialdata/FreqDatabases/NGM_Holland.csv
inst/tutorialdata/FreqDatabases/SGMPlus_Norway.csv
inst/tutorialdata/FreqDatabases/SGMPlus_UK.csv
inst/tutorialdata/FreqDatabases/SGM_German.csv
inst/tutorialdata/databaseESX17.txt
inst/tutorialdata/refs.csv
inst/tutorialdata/stain.txt
man
man/Qassignate.Rd
man/combineRank.Rd
man/contLikINT.Rd
man/contLikMCMC.Rd
man/contLikMLE.Rd
man/deconvolve.Rd
man/efm.Rd
man/exactMACdistr.Rd
man/genDataset.Rd
man/getGlist.Rd
man/getKit.Rd
man/iszerolik.Rd
man/logLiki.Rd
man/noncontrMLE.Rd
man/plotEPG.Rd
man/prepareC.Rd
man/simDOdistr.Rd
man/validMCMC.Rd
man/validMLEmodel.Rd
src
src/Makevars
src/Makevars.win
src/loglikgamma.cpp
gammadnamix documentation built on May 21, 2017, 12:57 a.m.