gammadnamix: Package for intepretation of quantitative DNA mixtures

gammadnamix contains procedures for maximization, integration and MCMC of likelihoods of a continuous model for replicated STR DNA mixtures for a general specifications of hypotheses. It also does deconvolution condition on the continuous model. The continuous model takes care of drop-out, drop-in, stutters and degradation. It also contains the graphical layer EuroForMix.

AuthorOyvind Bleka <Oyvind.Bleka@fhi.no>
Date of publication2015-04-15 14:36:27
MaintainerOyvind Bleka <Oyvind.Bleka@fhi.no>
LicenseGPL(>=2)
Version0.9.5

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Files in this package

gammadnamix/DESCRIPTION
gammadnamix/NAMESPACE
gammadnamix/R
gammadnamix/R/Qassignate.R gammadnamix/R/combineRank.R gammadnamix/R/contLikINT.R gammadnamix/R/contLikMCMC.R gammadnamix/R/contLikMLE.R gammadnamix/R/deconvolve.R gammadnamix/R/efm.R gammadnamix/R/exactMACdistr.R gammadnamix/R/genDataset.R gammadnamix/R/getGlist.R
gammadnamix/R/getKit.R
gammadnamix/R/iszerolik.R gammadnamix/R/logLiki.R gammadnamix/R/noncontrMLE.R
gammadnamix/R/plotEPG.R
gammadnamix/R/prepareC.R gammadnamix/R/simDOdistr.R gammadnamix/R/validMCMC.R gammadnamix/R/validMLEmodel.R
gammadnamix/inst
gammadnamix/inst/CowellMC15Example.R
gammadnamix/inst/extdata
gammadnamix/inst/extdata/kit.txt
gammadnamix/inst/mcData.Rdata
gammadnamix/inst/packageExample.R
gammadnamix/inst/tutorialdata
gammadnamix/inst/tutorialdata/FreqDatabases
gammadnamix/inst/tutorialdata/FreqDatabases/ESX17_Norway.csv
gammadnamix/inst/tutorialdata/FreqDatabases/Identifiler_Caucasian.csv
gammadnamix/inst/tutorialdata/FreqDatabases/Identifiler_NIST.csv
gammadnamix/inst/tutorialdata/FreqDatabases/NGM_Holland.csv
gammadnamix/inst/tutorialdata/FreqDatabases/SGMPlus_Norway.csv
gammadnamix/inst/tutorialdata/FreqDatabases/SGMPlus_UK.csv
gammadnamix/inst/tutorialdata/FreqDatabases/SGM_German.csv
gammadnamix/inst/tutorialdata/databaseESX17.txt
gammadnamix/inst/tutorialdata/refs.csv
gammadnamix/inst/tutorialdata/stain.txt
gammadnamix/man
gammadnamix/man/Qassignate.Rd gammadnamix/man/combineRank.Rd gammadnamix/man/contLikINT.Rd gammadnamix/man/contLikMCMC.Rd gammadnamix/man/contLikMLE.Rd gammadnamix/man/deconvolve.Rd gammadnamix/man/efm.Rd gammadnamix/man/exactMACdistr.Rd gammadnamix/man/genDataset.Rd gammadnamix/man/getGlist.Rd gammadnamix/man/getKit.Rd gammadnamix/man/iszerolik.Rd gammadnamix/man/logLiki.Rd gammadnamix/man/noncontrMLE.Rd gammadnamix/man/plotEPG.Rd gammadnamix/man/prepareC.Rd gammadnamix/man/simDOdistr.Rd gammadnamix/man/validMCMC.Rd gammadnamix/man/validMLEmodel.Rd
gammadnamix/src
gammadnamix/src/Makevars
gammadnamix/src/Makevars.win
gammadnamix/src/loglikgamma.cpp

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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