geneNetBP: Belief Propagation in Genotype-Phenotype Networks
Version 2.0.3

Belief propagation methods in genotype-phenotype networks (Conditional Gaussian and Discrete Bayesian Networks) to propagate phenotypic evidence through the network.

Browse man pages Browse package API and functions Browse package files

AuthorJanhavi Moharil
Date of publication2017-02-13 03:38:14
MaintainerJanhavi Moharil <janhavim@buffalo.edu>
LicenseGPL-2
Version2.0.3
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("geneNetBP", repos="http://R-Forge.R-project.org")

Man pages

absorb-methods: Absorb evidence and propagate beliefs in a genotype-phenotype...
fit-methods: Fit a Conditional Gaussian Bayesian Network or Discrete...
geneNetBP-package: Belief Propagation in Genotype-Phenotype Networks
gen.evidence: Generate a sequence of evidence for a continuous node in a...
hdl: Mus Musculus HDL QTL data from Leduc et. al. (2012)
mouse: Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
plot-methods: Plot a Genotype-Phenotype Network
toy: Toy example dataset
yeast: Saccharomyces Cerevisiae eQTL data from Kruglak et. al....

Functions

GenConstraints Source code
absorb.dbn Man page Source code
absorb.gnbp Man page Source code
fit.dbn Man page Source code
fit.gnbp Man page Source code
gen.evidence Man page Source code
geneNetBP Man page
geneNetBP-package Man page
get.FC Source code
get.FC.grn Source code
get.belief.bn Source code
get.cpt.grn Source code
get.jsi Source code
get.marginal.bn Source code Source code
hdl Man page
mouse Man page
plot.dbn Man page Source code
plot.dbnfit Man page Source code
plot.gnbp Man page Source code
plot.gpfit Man page Source code
toy Man page
yeast Man page

Files

DESCRIPTION
NAMESPACE
R
R/absorb.dbn.R
R/absorb.gnbp.R
R/fit.dbn.R
R/fit.gnbp.R
R/gen.evidence.R
R/plot-methods.R
build
build/vignette.rds
data
data/hdl.rda
data/mouse.rda
data/toy.rda
data/yeast.rda
inst
inst/doc
inst/doc/geneNetBPvignette.R
inst/doc/geneNetBPvignette.Rnw
inst/doc/geneNetBPvignette.pdf
man
man/absorb-methods.Rd
man/fit-methods.Rd
man/gen.evidence.Rd
man/geneNetBP-package.Rd
man/hdl.Rd
man/mouse.Rd
man/plot-methods.Rd
man/toy.Rd
man/yeast.Rd
vignettes
vignettes/geneNetBPvignette.Rnw
vignettes/hdl_gnbp.eps
vignettes/mouse_cgbn_gpfit.eps
vignettes/mouse_network_tlr12.png
vignettes/mouse_network_tlr12_colpalette.jpeg
vignettes/mouse_tlr12_evidence.png
vignettes/newbib02.bib
vignettes/plos2009.bst
vignettes/toy_graph.png
vignettes/toy_network_belief.png
vignettes/yeast_db_cox10.eps
vignettes/yeast_db_cox10_FC.eps
vignettes/yeast_db_dbnfit.eps
vignettes/yeast_db_gpfit.eps
geneNetBP documentation built on May 21, 2017, 1:12 a.m.