geneNetBP: Belief Propagation in Genotype-Phenotype Networks

Belief propagation methods in genotype-phenotype networks (Conditional Gaussian and Discrete Bayesian Networks) to propagate phenotypic evidence through the network.

AuthorJanhavi Moharil
Date of publication2017-02-13 03:38:14
MaintainerJanhavi Moharil <janhavim@buffalo.edu>
LicenseGPL-2
Version2.0.3

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Files

DESCRIPTION
NAMESPACE
R
R/absorb.dbn.R R/absorb.gnbp.R R/fit.dbn.R R/fit.gnbp.R R/gen.evidence.R R/plot-methods.R
build
build/vignette.rds
data
data/hdl.rda
data/mouse.rda
data/toy.rda
data/yeast.rda
inst
inst/doc
inst/doc/geneNetBPvignette.R
inst/doc/geneNetBPvignette.Rnw
inst/doc/geneNetBPvignette.pdf
man
man/absorb-methods.Rd man/fit-methods.Rd man/gen.evidence.Rd man/geneNetBP-package.Rd man/hdl.Rd man/mouse.Rd man/plot-methods.Rd man/toy.Rd man/yeast.Rd
vignettes
vignettes/geneNetBPvignette.Rnw
vignettes/hdl_gnbp.eps
vignettes/mouse_cgbn_gpfit.eps
vignettes/mouse_network_tlr12.png
vignettes/mouse_network_tlr12_colpalette.jpeg
vignettes/mouse_tlr12_evidence.png
vignettes/newbib02.bib
vignettes/plos2009.bst
vignettes/toy_graph.png
vignettes/toy_network_belief.png
vignettes/yeast_db_cox10.eps
vignettes/yeast_db_cox10_FC.eps
vignettes/yeast_db_dbnfit.eps
vignettes/yeast_db_gpfit.eps

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