mouse: Mus Musculus Kidney eQTL data from Hageman et. al. (2011)

In geneNetBP: Belief Propagation in Genotype-Phenotype Networks

Description

Kidney eQTL data was obtained from a F2 inner-cross between inbred MRL/MpJ and SM/J strains of mice.

Usage

data(mouse)

Format

The data set mouse is a data frame consisting of 173 observations of 19 variables: genotype data (genotype states at 5 SNP markers) and phenotype data (normalized expression data of 14 genes). Genotype data is of class factor and phenotype data is of class numeric.

Details

Kidney eQTL data was obtained from a F2 inner-cross between inbred MRL/MpJ and SM/J strains of mice.

Source

Hageman,R.S., Leduc,M.S., Caputo,C.R., Tsaih,S.-W., Churchill, G.A., and Korstanje,R.(2011). "Uncovering genes and regulatory pathways related to urinary albumin excretion." Journal of the American Society of Nephrology22, 1, 73-81.

Examples

## Not run: 
# load the data and fit a genotype-phenotype network
data(mouse)
fit.gnbp(mouse[,1:5],mouse[,6:19])

## End(Not run)

geneNetBP documentation built on May 2, 2019, 5:19 p.m.