geoCount: Analysis and Modeling for Geostatistical Count Data
Version 1.130409

This package provides a variety of functions to analyze and model geostatistical count data with generalized linear spatial models, including 1) simulate and visualize the data; 2) posterior sampling with robust MCMC algorithms (in serial or parallel way); 3) perform prediction for unsampled locations; 4) conduct Bayesian model checking procedure to evaluate the goodness of fitting; 5) conduct transformed residual checking procedure. In the package, seamlessly embedded C++ programs and parallel computing techniques are implemented to speed up the computing processes.

AuthorLiang Jing
Date of publication2013-04-30 13:01:08
MaintainerLiang Jing <ljing918@gmail.com>
LicenseGPL (>= 2)
Version1.130409
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("geoCount", repos="http://R-Forge.R-project.org")

Popular man pages

baseline.dist: Generate Distance Samples to Build Baseline Distribution
plot_baseline: Plot Baseline Samples
pOne: Calculate One-side P-value
rhoMatern: Matern Correlation Function
runMCMC: Perform Robust MCMC Algorithms for GLSM
tranR: Calculate Transformed Residuals for Observed Data
U2Z: Convert Distance Matrix to Correlation Matrix
See all...

All man pages Function index File listing

Man pages

baseline.dist: Generate Distance Samples to Build Baseline Distribution
baseline.parallel: Generate Distance Samples to Build Baseline Distribution...
BMCT: Perform Bayesian Model Checking
cdfU: Approximate the CDF Value from Reference Samples
cutChain: Modify Markov Chains with Burn-in and Thining
d.base: Data Set of Baseline Samples
e2dist: Calculate Distances between Transformed Residuals and...
Earthquakes: Data Set of Earthquakes
findMode: Estimate Mode of the Posterior Samples
helloWorld: Hello
loc2U: Calculate the Distance Matrix among Given Locations
loc2U_R: Calculate the Distance Matrix among Given Locations
locCircle: Simulate Circlular Locations
locGrid: Simulate Locations on Grid
locSquad: Simulate Squared Locations
locUloc: Calculate the Distance Matrix Between Observed and Predicting...
locUloc_R: Calculate the Distance Matrix Between Observed and Predicting...
MCMCinput: Settings for the MCMC Algorithm
mixChain: Mix Parallel Markov Chains
plotACF: Auto-correlation Plot for Latent Variables
plot_baseline: Plot Baseline Samples
plotData: Plot Geostatistical Data
plotDataBD: Plot Geostatistical Data
plot_etran: Plot Transformed Residuals
plot_pRPS: Plot Observed vs. Reference Diagnostic Statistics
pOne: Calculate One-side P-value
predY: Predict for Unsampled Locations
pRPS: Calculate P-value and RPS
repYeb: Generate Replicated Data with Estimated Parameters
repYpost: Generate Replicated Data with Posterior Samples of Latent...
rhoMatern: Matern Correlation Function
rhoPowerExp: Powered Exponential Correlation Function
Rongelap: Data Set of Rongelap Island
runMCMC: Perform Robust MCMC Algorithms for GLSM
runMCMC.multiChain: Perform Robust MCMC Algorithms for GLSM in Parallel
runMCMC.sf: Perform Robust MCMC Algorithms for GLSM in Parallel
simData: Simulate Data Set from Generalized Linear Spatial Model on...
TexasCounty.boundary: Data Set of Texas County Boundries
TexasCounty.center: Data Set of Texas County Centers
TexasCounty.population: Data Set of Texas County Population
tranR: Calculate Transformed Residuals for Observed Data
U2Z: Convert Distance Matrix to Correlation Matrix
unifLoc: Scale Locations into A Unit Square
Weed: Weed Data

Functions

BMCT Man page Source code
Earthquakes Man page
MCMCinput Man page Source code
Rongelap Man page
TexasCounty.boundary Man page
TexasCounty.center Man page
TexasCounty.population Man page
U2Z Man page Source code
Weed Man page
baseline.dist Man page Source code
baseline.parallel Man page Source code
cdfU Man page Source code
cutChain Man page Source code
d.base Man page
e2dist Man page Source code
findMode Man page Source code
helloWorld Man page Source code
loc2U Man page Source code
loc2U_R Man page Source code
locCircle Man page Source code
locGrid Man page Source code
locSquad Man page Source code
locUloc Man page Source code
locUloc_R Man page Source code
mixChain Man page Source code
pOne Man page Source code
pRPS Man page Source code
plotACF Man page Source code
plotData Man page Source code
plotDataBD Man page
plotTexas Source code
plot_baseline Man page Source code
plot_dart Source code
plot_etran Man page Source code
plot_pRPS Man page Source code
predY Man page Source code
repYeb Man page Source code
repYpost Man page Source code
rhoMatern Man page Source code
rhoPowerExp Man page Source code
rhoSph Source code
runMCMC Man page Source code
runMCMC.multiChain Man page Source code
runMCMC.sf Man page Source code
runMCMC_ Source code
runMCMCpartialPois_ Source code
simData Man page Source code
tranR Man page Source code
unifLoc Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/checkingBMC.R
R/checkingTRC.R
R/helloWorld.R
R/locUZ.R
R/plotDart.R
R/plotData.R
R/postMCMC.R
R/runMCMC.R
R/simData.R
cleanup
configure
configure.in
data
data/Dbase_n100N5000.RData
data/TexasCounty_boundary.RData
data/TexasCounty_center.RData
data/TexasCounty_population.RData
data/datEarthquake.RData
data/datRongelap.RData
data/datWeed.RData
data/datalist
inst
inst/doc
inst/doc/geoCount_HowtoUse.R
inst/doc/geoCount_HowtoUse.pdf
inst/doc/geoCount_manul.pdf
man
man/BMCT.Rd
man/Earthquakes.Rd
man/MCMCinput.Rd
man/Rongelap.Rd
man/TexasCounty.boundary.Rd
man/TexasCounty.center.Rd
man/TexasCounty.population.Rd
man/U2Z.Rd
man/Weed.Rd
man/baseline.dist.Rd
man/baseline.parallel.Rd
man/cdfU.Rd
man/cutChain.Rd
man/d.base.Rd
man/e2dist.Rd
man/findMode.Rd
man/helloWorld.Rd
man/loc2U.Rd
man/loc2U_R.Rd
man/locCircle.Rd
man/locGrid.Rd
man/locSquad.Rd
man/locUloc.Rd
man/locUloc_R.Rd
man/mixChain.Rd
man/pOne.Rd
man/pRPS.Rd
man/plotACF.Rd
man/plotData.Rd
man/plotDataBD.Rd
man/plot_baseline.Rd
man/plot_etran.Rd
man/plot_pRPS.Rd
man/predY.Rd
man/repYeb.Rd
man/repYpost.Rd
man/rhoMatern.Rd
man/rhoPowerExp.Rd
man/runMCMC.Rd
man/runMCMC.multiChain.Rd
man/runMCMC.sf.Rd
man/simData.Rd
man/tranR.Rd
man/unifLoc.Rd
src
src/Makevars.in
src/Makevars.win
src/helloWorld.cpp
src/loc2U.cpp
src/runMCMC.h
src/runMCMCBP.cpp
src/runMCMCfunc.cpp
src/runMCMCpartialPois.cpp
geoCount documentation built on May 21, 2017, 1:37 a.m.

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