geoCount: Analysis and Modeling for Geostatistical Count Data

This package provides a variety of functions to analyze and model geostatistical count data with generalized linear spatial models, including 1) simulate and visualize the data; 2) posterior sampling with robust MCMC algorithms (in serial or parallel way); 3) perform prediction for unsampled locations; 4) conduct Bayesian model checking procedure to evaluate the goodness of fitting; 5) conduct transformed residual checking procedure. In the package, seamlessly embedded C++ programs and parallel computing techniques are implemented to speed up the computing processes.

AuthorLiang Jing
Date of publication2013-04-30 13:01:08
MaintainerLiang Jing <ljing918@gmail.com>
LicenseGPL (>= 2)
Version1.130409

View on R-Forge

Man pages

baseline.dist: Generate Distance Samples to Build Baseline Distribution

baseline.parallel: Generate Distance Samples to Build Baseline Distribution...

BMCT: Perform Bayesian Model Checking

cdfU: Approximate the CDF Value from Reference Samples

cutChain: Modify Markov Chains with Burn-in and Thining

d.base: Data Set of Baseline Samples

e2dist: Calculate Distances between Transformed Residuals and...

Earthquakes: Data Set of Earthquakes

findMode: Estimate Mode of the Posterior Samples

helloWorld: Hello

loc2U: Calculate the Distance Matrix among Given Locations

loc2U_R: Calculate the Distance Matrix among Given Locations

locCircle: Simulate Circlular Locations

locGrid: Simulate Locations on Grid

locSquad: Simulate Squared Locations

locUloc: Calculate the Distance Matrix Between Observed and Predicting...

locUloc_R: Calculate the Distance Matrix Between Observed and Predicting...

MCMCinput: Settings for the MCMC Algorithm

mixChain: Mix Parallel Markov Chains

plotACF: Auto-correlation Plot for Latent Variables

plot_baseline: Plot Baseline Samples

plotData: Plot Geostatistical Data

plotDataBD: Plot Geostatistical Data

plot_etran: Plot Transformed Residuals

plot_pRPS: Plot Observed vs. Reference Diagnostic Statistics

pOne: Calculate One-side P-value

predY: Predict for Unsampled Locations

pRPS: Calculate P-value and RPS

repYeb: Generate Replicated Data with Estimated Parameters

repYpost: Generate Replicated Data with Posterior Samples of Latent...

rhoMatern: Matern Correlation Function

rhoPowerExp: Powered Exponential Correlation Function

Rongelap: Data Set of Rongelap Island

runMCMC: Perform Robust MCMC Algorithms for GLSM

runMCMC.multiChain: Perform Robust MCMC Algorithms for GLSM in Parallel

runMCMC.sf: Perform Robust MCMC Algorithms for GLSM in Parallel

simData: Simulate Data Set from Generalized Linear Spatial Model on...

TexasCounty.boundary: Data Set of Texas County Boundries

TexasCounty.center: Data Set of Texas County Centers

TexasCounty.population: Data Set of Texas County Population

tranR: Calculate Transformed Residuals for Observed Data

U2Z: Convert Distance Matrix to Correlation Matrix

unifLoc: Scale Locations into A Unit Square

Weed: Weed Data

Files in this package

geoCount/DESCRIPTION
geoCount/NAMESPACE
geoCount/R
geoCount/R/checkingBMC.R geoCount/R/checkingTRC.R geoCount/R/helloWorld.R geoCount/R/locUZ.R geoCount/R/plotDart.R geoCount/R/plotData.R geoCount/R/postMCMC.R geoCount/R/runMCMC.R geoCount/R/simData.R
geoCount/cleanup
geoCount/configure
geoCount/configure.in
geoCount/data
geoCount/data/Dbase_n100N5000.RData
geoCount/data/TexasCounty_boundary.RData
geoCount/data/TexasCounty_center.RData
geoCount/data/TexasCounty_population.RData
geoCount/data/datEarthquake.RData
geoCount/data/datRongelap.RData
geoCount/data/datWeed.RData
geoCount/data/datalist
geoCount/inst
geoCount/inst/doc
geoCount/inst/doc/geoCount_HowtoUse.R
geoCount/inst/doc/geoCount_HowtoUse.pdf
geoCount/inst/doc/geoCount_manul.pdf
geoCount/man
geoCount/man/BMCT.Rd geoCount/man/Earthquakes.Rd geoCount/man/MCMCinput.Rd geoCount/man/Rongelap.Rd geoCount/man/TexasCounty.boundary.Rd geoCount/man/TexasCounty.center.Rd geoCount/man/TexasCounty.population.Rd geoCount/man/U2Z.Rd geoCount/man/Weed.Rd geoCount/man/baseline.dist.Rd geoCount/man/baseline.parallel.Rd geoCount/man/cdfU.Rd geoCount/man/cutChain.Rd geoCount/man/d.base.Rd geoCount/man/e2dist.Rd geoCount/man/findMode.Rd geoCount/man/helloWorld.Rd geoCount/man/loc2U.Rd geoCount/man/loc2U_R.Rd geoCount/man/locCircle.Rd geoCount/man/locGrid.Rd geoCount/man/locSquad.Rd geoCount/man/locUloc.Rd geoCount/man/locUloc_R.Rd geoCount/man/mixChain.Rd geoCount/man/pOne.Rd geoCount/man/pRPS.Rd geoCount/man/plotACF.Rd geoCount/man/plotData.Rd geoCount/man/plotDataBD.Rd geoCount/man/plot_baseline.Rd geoCount/man/plot_etran.Rd geoCount/man/plot_pRPS.Rd geoCount/man/predY.Rd geoCount/man/repYeb.Rd geoCount/man/repYpost.Rd geoCount/man/rhoMatern.Rd geoCount/man/rhoPowerExp.Rd geoCount/man/runMCMC.Rd geoCount/man/runMCMC.multiChain.Rd geoCount/man/runMCMC.sf.Rd geoCount/man/simData.Rd geoCount/man/tranR.Rd geoCount/man/unifLoc.Rd
geoCount/src
geoCount/src/Makevars.in
geoCount/src/Makevars.win
geoCount/src/helloWorld.cpp
geoCount/src/loc2U.cpp
geoCount/src/runMCMC.h
geoCount/src/runMCMCBP.cpp
geoCount/src/runMCMCfunc.cpp
geoCount/src/runMCMCpartialPois.cpp

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.