gradientForest: Random Forest functions for the Census of Marine Life synthesis project.

Analyses species data using random forests, collates the split-point improvements in impurity, and uses these to convert predictor variables into a biologically-informed importance scale. This version allows combinations of gradientForest objects with different predictors.

AuthorS.J. Smith <Stephen.Smith@dfo-mpo.gc.ca> and N. Ellis <Nick.Ellis@csiro.au>
Date of publication2014-11-28 05:50:59
MaintainerN. Ellis <Nick.Ellis@csiro.au>
LicenseGPL (>= 2)
Version0.1-17
http://www.r-project.org

View on R-Forge

Functions

combinedGradientForest Man page
CoMLsimulation Man page
cumimp Man page
cumimp.combinedGradientForest Man page
cumimp.gradientForest Man page
density.combinedGradientForest Man page
density.gradientForest Man page
GBRexample Man page
gf.GBR Man page
gradientForest Man page
importance.combinedGradientForest Man page
importance.gradientForest Man page
Phys_grid Man page
Phys_site Man page
plot.gradientForest Man page
plot.predict.combinedGradientForest Man page
plot.predict.gradientForest Man page
predict.combinedGradientForest Man page
predict.gradientForest Man page
print.combinedGradientForest Man page
print.gradientForest Man page
Sp_mat Man page
Xsimulation Man page
Ysimulation Man page

Files

DESCRIPTION
NAMESPACE
R
R/Impurity.based.measures.R R/agg.sum.R R/bin.R R/combine.cumulative.importance.lm.r R/combine.cumulative.importance.method1.r R/combine.cumulative.importance.r R/combined.cumulative.importance.plot.r R/combined.performance.plot.r R/combinedGradientForest.r R/cumimp.combinedGradientForest.r R/cumimp.gradientForest.r R/cumimp.r R/density.combinedGradientForest.r R/density.gradientForest.r R/getSplitImprove.R R/getSplitImproveClass.R R/getSplitImproveClassCompact.r R/getSplitImproveCompact.r R/gradientForest.R R/importance.combinedGradientForest.r R/importance.gradientForest.r R/n2mfrow.r R/namenames.r R/overall.importance.combinedGradientForest.plot.r R/overall.importance.plot.R R/performance.plot.R R/plot.combinedGradientForest.r R/plot.gradientForest.r R/plot.predict.gradientForest.r R/predict.combinedGradientForest.r R/predict.gradientForest.r R/predictor.density.plot.r R/predictor.ranges.plot.r R/print.combinedGradientForest.r R/print.gradientForest.r R/species.cumulative.plot.R R/split.density.plot.method2.R R/whiten.R
build
build/vignette.rds
data
data/CoMLsimulation.rda
data/GBRexample.rda
data/datalist
inst
inst/CITATION
inst/doc
inst/doc/GZ.phys.grid.Rdata
inst/doc/GZ.phys.site.Rdata
inst/doc/GZ.sps.mat.Rdata
inst/doc/biodiversity-survey.R
inst/doc/biodiversity-survey.pdf
inst/doc/biodiversity-survey.rnw
inst/doc/gf.Rdata
man
man/CoMLsimulation.Rd man/GBRexample.Rd man/combinedGradientForest.Rd man/cumimp.combinedGradientForest.Rd man/cumimp.gradientForest.Rd man/density.gradientForest.Rd man/gradientForest.Rd man/importance.combinedGradientForest.Rd man/importance.gradientForest.Rd
man/plot.combinedGradientForest.rd
man/plot.gradientForest.Rd man/plot.predict.gradientForest.Rd man/predict.gradientForest.Rd man/print.gradientForest.Rd
vignettes
vignettes/GZ.phys.grid.Rdata
vignettes/GZ.phys.site.Rdata
vignettes/GZ.sps.mat.Rdata
vignettes/biodiversity-survey.bib
vignettes/biodiversity-survey.rnw
vignettes/gf.Rdata

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.