| AccuracyAssessment | Accuracy assessment from a contingency table |
| AllEqual | Check if all values in a vector are the same |
| AllTsteps | Convert an irregular zoo time series to a zoo time series... |
| AnomaliesFiltersLags | Calculate anomalies, lags and rolling windows |
| brgr.colors | Brown-to-green color palette for NDVI trend maps |
| Col2 | Adds transparency to a colour |
| ColorMatrix | Create a square matrix of colors |
| CompareClassification | Compare two classification maps |
| CorrectDOY | Correct day-of-year time series |
| CropNA | Crop outer NA values from a raster |
| Decompose | Simple decomposition of time series |
| FillPermanentGaps | Fill permanent gaps in time series |
| FitDoubleLogBeck | Fit a double logisitic function to a vector according to Beck... |
| FitDoubleLogElmore | Fit a double logisitic function to a vector according to... |
| GetTsStatisticsRaster | Estimate statistical properties of time series in a... |
| Greenup | Identify greenup and senescence periods in time series |
| IsPermanentGap | Identify if a gap in a time series occurs permanently |
| Kappa | Calculate the Kappa coefficient of two classifications |
| LmSeasonalCycle | Calculate the mean seasonal cycle of a time series based on a... |
| MannKendallSeg | Apply MannKendall test for segments of a time series |
| MeanSeasonalCycle | Calculate the mean seasonal cycle of a time series |
| MtsPlot | Multiple time series plot |
| NamesPhenologyRaster | Get the layer names for a PhenologyRaster raster brick |
| NamesTrendRaster | Get the layer names for a TrendRaster raster brick |
| ndvi | Time series of Normalized Difference Vegetation Index |
| ndvimap | Map of Normalized Difference Vegetation Index |
| NoBP | Initialize an empty list with breakpoints |
| NoTrend | Initialize an empty object of class "Trend" |
| NoUnc | Initialize an empty data.frame for trend uncertainties |
| PhenoDeriv | Method 'Deriv' to calculate phenology metrics |
| Phenology | Calculate phenology metrics in time series |
| PhenologyRaster | Calculate phenology metrics on time series in gridded... |
| PhenopixMY | Multi-year phenology analysis using phenopix |
| PhenoTrs | Method 'Trs' to calculate phenology metrics |
| plot.CompareClassification | plot a comparison of two classification rasters |
| PlotPhenCycle | Plot a easonal cycle with phenology metrics |
| plot.Phenology | Plot time series of phenology metrics |
| plot.PhenopixMY | Plot multi-year phenopix objects |
| plot.Trend | Plot trend and breakpoint results |
| plot.TrendGradient | Plotting function for objects of class TrendGradient |
| plot.TrendSample | Plot uncertainty of estimated trend based on start and end... |
| PolygonNA | Plot a polygon by accounting for NA values (breaks in... |
| print.Phenology | Prints phenology metrics |
| print.Trend | Prints trends |
| Seasonality | Check a time series for seasonality |
| SimIAV | Simulate the inter-annual variability component of a... |
| SimRem | Simulate the short-term variability component of a surrogate... |
| SimSeas | Simulate the seasonal component of a surrogate time series |
| SimTrend | Simulate trend and breakpoints of a surrogate time series |
| SimTs | Simulate surrogate time series |
| SplitRasterEqually | Splits a raster in equal-area parts |
| Trend | Calculate trends and trend changes in time series |
| TrendAAT | Trend estimation based on annual aggregated time series |
| TrendClassification | Classify a raster in greening and browning trends |
| TrendGradient | Calculate temporal trends along a spatial gradient |
| TrendLongestSEG | Extract slope and p-value for the longest time series segment... |
| TrendPoly | Trend estimation based on a 4th order polynomial |
| TrendRaster | Calculate trends on time series in gridded (raster) data |
| TrendRQ | Trend estimation based on quantile regression |
| TrendRunmed | Trend estimation based on a running median |
| TrendSample | Compute trend statistics by sampling a time series according... |
| TrendSeasonalAdjusted | Trend estimation based on seasonal-adjusted time series |
| TrendSegmentsRaster | Identify for each multi-temporal raster layer the number of... |
| TrendSpline | Trend estimation based on a smoothing splines |
| TrendSTL | Trend estimation based on STL (Seasonal Decomposition of Time... |
| TrendSTM | Trend estimation based on a season-trend model |
| TrendText | Text of trends in time series |
| TrendUncertainty | Compute uncertainties in trend statistics according to... |
| TSGFdoublelog | Temporal smoothing and gap filling using double logisitic... |
| TSGFlinear | Temporal smoothing and gap filling using linear interpolation |
| TSGFphenopix | Temporal smoothing and gap filling using phenopix |
| TSGFspline | Temporal smoothing and gap filling using splines |
| TSGFstm | Temporal smoothing and gap filling based on a season-trend... |
| TsPP | Pre-processing of time series |
