immunoassay: Functions for working with immunoassay data.

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This package contains several functions for loading immunoassay data, fine-tuning of sigmoidal models beyond the limits of instrument software; and for batch processing of immunoassay output files and creation of reports with nice graphics.

Author
Michal J. Figurski, PhD; Leslie M. Shaw, PhD.
Date of publication
None
Maintainer
Michal J. Figurski <mfigrs@gmail.com>
License
GPL-2
Version
0.41

View on R-Forge

Man pages

batch
Batch-processing function for immunoassay data.
check
Function to examine the sigmoidal fit and provide...
Example_run
Example Luminex run file.
immunoassay-internal
Internal 'immunoassay' library objects
immunoassay.kits
Example dataset with kits data for use by function "sigfit".
immunoassay-package
Functions to aid fitting and batch processing of immunoassay...
KitLots
Example .csv dataset with kits data.
plot.ima
Method for plotting "ima" objects.
plot.sigfit
Basic display methods for objects fitted by the "sigfit"...
predict.ima
Predict method for "ima" class objects.
predict.sigfit
Predict method for "sigfit" function.
print.ima
Methods for printing "ima" objects.
Project
Exemplary functions and report templates
read.kits
Function that reads and processes the kit data csv file.
read.multiplex
Load raw data from multiplex (x-MAP technology) run file.
sigfit
Fit the sigmoidal model to raw immunoassay run data.

Files in this package

immunoassay
immunoassay/data
immunoassay/data/KitLots.csv.gz
immunoassay/data/Example_run.csv.xz
immunoassay/data/immunoassay.kits.rda
immunoassay/R
immunoassay/R/sigfit.R
immunoassay/R/project.R
immunoassay/R/methods.ima.R
immunoassay/R/immunoassay-internal.R
immunoassay/R/methods.sigfit.R
immunoassay/R/check.R
immunoassay/R/read.R
immunoassay/R/batch.R
immunoassay/NAMESPACE
immunoassay/inst
immunoassay/inst/templates
immunoassay/inst/templates/example.run-report.r
immunoassay/inst/templates/Sweave.sty
immunoassay/inst/templates/example.project-report.r
immunoassay/inst/docs
immunoassay/inst/docs/immunoassay-manual.pdf
immunoassay/CHANGES
immunoassay/DESCRIPTION
immunoassay/man
immunoassay/man/KitLots.Rd
immunoassay/man/plot.ima.Rd
immunoassay/man/plot.sigfit.Rd
immunoassay/man/predict.ima.Rd
immunoassay/man/immunoassay-package.Rd
immunoassay/man/check.Rd
immunoassay/man/immunoassay-internal.Rd
immunoassay/man/Project.Rd
immunoassay/man/Example_run.Rd
immunoassay/man/print.ima.Rd
immunoassay/man/sigfit.Rd
immunoassay/man/read.kits.Rd
immunoassay/man/read.multiplex.Rd
immunoassay/man/predict.sigfit.Rd
immunoassay/man/immunoassay.kits.Rd
immunoassay/man/batch.Rd