inspectr: Storing, manipulating and analysis spectroscopy and associated data in R.

Stores and eases the manipulation of spectra and associated data, with dedicated classes for spatial and soil-related datasets.

Author
Pierre Roudier <pierre.roudier@gmail.com>
Date of publication
2014-05-12 03:15:43
Maintainer
Pierre Roudier <pierre.roudier@gmail.com>
License
GPL
Version
0.3-15
URLs

View on R-Forge

Man pages

aggregate_spectra
Aggregates spectral and data information
apply_spectra
Apply a function on the spectra of a Spectra* object
australia
Australia spectra library data set
baseline
Baseline correction using the baseline package
big.head
Return the First or Last Part of an Object
continuum_removal
Continuum removal
coordinates
Sets spatial coordinates to create 'SpatialSpectraDataFrame'...
cut
Manipulating the wavelength range of a 'Spectra' object
extract
Extracting and replacing parts of Spectra* objects
features
Retrieves or sets the data slot of a SpectraDataFrame object.
fill_spectra
Fill missing wavelengths of a Spectra* object with a given...
ids
Retrieves or sets the ids of a 'Spectra*' object.
kenstone
Kennard-Stone algorithm for optimal calibration set...
melt_spectra
melt_spectra
mutate
Mutate a Spectra* object by transforming the spectra values,...
nrow
Retrieve dimensions of Spectra* objects
plot.Spectra
Plots an object inheriting from the Spectra class
rbind
Stacking 'Spectra' objects together
separate
Separates a 'Spectra*' object into a calibration and a...
snv
Standard and Robust Normal Variate transformations
SpatialSpectraDataFrame
Constructor for the SpatialSpectraDataFrame class.
Spectra
Constructor for the Spectra class.
Spectra-classes
Spectra* classes
SpectraDataFrame
Constructor for the SpectraDataFrame class.
spectra-methods
Retrieves or sets the spectra of a 'Spectra*' objects.
splice
"Splicing" and interpolation of spectra
split
Split a Spectra* object using factors
subset
Subset SpectraDataFrame object
summary
Summary
wl-methods
Retrieves or sets the wavelengths of a 'Spectra*' object.
wl_units
Wavelengths of Spectra* objects

Files in this package

inspectr/DESCRIPTION
inspectr/NAMESPACE
inspectr/NEWS
inspectr/R
inspectr/R/AAA-Classes.R
inspectr/R/SpatialSpectraDataFrame-methods.R
inspectr/R/Spectra-methods.R
inspectr/R/SpectraDataFrame-methods.R
inspectr/R/ZZZ.R
inspectr/R/aggregate_spectra.R
inspectr/R/big_head.R
inspectr/R/helpers.R
inspectr/R/kenstone.R
inspectr/R/performance.R
inspectr/R/plot-methods.R
inspectr/R/preprocessing.R
inspectr/R/setters.R
inspectr/R/splice.R
inspectr/README.md
inspectr/TODO
inspectr/data
inspectr/data/australia.rda
inspectr/data/datalist
inspectr/inst
inspectr/inst/CITATION
inspectr/inst/doc
inspectr/inst/doc/inspectr-intro.Rnw
inspectr/man
inspectr/man/SpatialSpectraDataFrame.Rd
inspectr/man/Spectra-classes.Rd
inspectr/man/Spectra.Rd
inspectr/man/SpectraDataFrame.Rd
inspectr/man/aggregate_spectra.Rd
inspectr/man/apply_spectra.Rd
inspectr/man/australia.Rd
inspectr/man/baseline.Rd
inspectr/man/big.head.Rd
inspectr/man/continuum_removal.Rd
inspectr/man/coordinates.Rd
inspectr/man/cut.Rd
inspectr/man/extract.Rd
inspectr/man/features.Rd
inspectr/man/fill_spectra.Rd
inspectr/man/ids.Rd
inspectr/man/kenstone.Rd
inspectr/man/melt_spectra.Rd
inspectr/man/mutate.Rd
inspectr/man/nrow.Rd
inspectr/man/plot.Spectra.Rd
inspectr/man/rbind.Rd
inspectr/man/separate.Rd
inspectr/man/snv.Rd
inspectr/man/spectra-methods.Rd
inspectr/man/splice.Rd
inspectr/man/split.Rd
inspectr/man/subset.Rd
inspectr/man/summary.Rd
inspectr/man/wl-methods.Rd
inspectr/man/wl_units.Rd