extract: Extracting and replacing parts of Spectra* objects

In inspectr: Storing, manipulating and analysis spectroscopy and associated data in R.

Description

These methods emulates classic base methods '[', '[[' and '$' to extract or replace parts of Spectra* objects.

Value

These methods either return an object of the same clss as x, or can promote a Spectra object to a SpectraDataFrame object by adding data ("[[<-" and "$<-" methods).

Methods

x=Spectra

x[i, j, ..., drop = FALSE]

x$name <- value

x[[name]] <- value

	x	A Spectra object
	i	Row index of the selected individuals
	j	Selected wavelengths
	name	A literal character string or a name
	...	Ignored
	drop	Ignored

x=SpectraDataFrame

x[i, j, k, ..., drop = FALSE]

x[[name]]

x[[name]] <- value

x$name

x$name <- value

	x	A SpectraDataFrame object
	i	Row index of the selected individuals
	j	Selected wavelengths
	k	Selected columns in the @data slot
	name	A literal character string or a name
	...	Ignored
	drop	Ignored

Author(s)

Pierre Roudier [e-mail]

See Also

subset, aggregate_spectra

Examples

# Loading example data
data(australia)
spectra(australia) <- sr_no ~ ... ~ 350:2500

# Getting features information from SpectraDataFrame
australia$carbon
australia[['carbon']]

# Creating new features
australia$foo <- runif(nrow(australia))
australia[['bar']] <- runif(nrow(australia))
summary(australia)

# Replacing values
australia$foo <- sample(LETTERS[1:5], size = nrow(australia), replace = TRUE)
australia[['bar']] <- sample(c(TRUE, FALSE), size = nrow(australia), replace = TRUE)
summary(australia)

# Promote Spectra to SpectraDataFrame
s <- as(australia, 'Spectra')
class(s)
s$foo <- runif(nrow(s))
summary(s)

inspectr documentation built on May 2, 2019, 5:45 p.m.