integIRTy: Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory

This package provides a systematic framework for integrating multiple modalities of assays profiled on the same set of samples. The goal is to identify genes that are altered in cancer either marginally or consistently across different assays. The heterogeneity among different platforms and different samples are automatically adjusted so that the overall alteration magnitude can be accurately inferred.

AuthorPan Tong, Kevin R Coombes
Date of publication2015-05-26 18:30:42
MaintainerPan Tong <nickytong@gmail.com>
LicenseApache License (== 2.0)
Version1.0.0
http://oompa.r-forge.r-project.org/

View on R-Forge

Files in this package

integIRTy/DESCRIPTION
integIRTy/NAMESPACE
integIRTy/R
integIRTy/R/Ii.R integIRTy/R/Pi.R integIRTy/R/calculatePermutedScoreByGeneSampling.R integIRTy/R/computeAbility.R integIRTy/R/fitOnSinglePlat.R integIRTy/R/intIRTeasyRun.R integIRTy/R/intIRTeasyRunFromRaw.R integIRTy/R/miscellaneous.R integIRTy/R/simulateBinaryResponseMat.R integIRTy/R/thetaEst.R
integIRTy/build
integIRTy/build/vignette.rds
integIRTy/data
integIRTy/data/OV.rda
integIRTy/inst
integIRTy/inst/doc
integIRTy/inst/doc/integIRTy.R
integIRTy/inst/doc/integIRTy.Rnw
integIRTy/inst/doc/integIRTy.pdf
integIRTy/man
integIRTy/man/calculatePermutedScoreByGeneSampling.Rd integIRTy/man/computeAbility.Rd integIRTy/man/datasets.Rd integIRTy/man/dichotomize.Rd integIRTy/man/dichotomizeCN.Rd integIRTy/man/dichotomizeExpr.Rd integIRTy/man/dichotomizeMethy.Rd integIRTy/man/fitOnSinglePlat.Rd integIRTy/man/intIRTeasyRun.Rd integIRTy/man/intIRTeasyRunFromRaw.Rd integIRTy/man/simulateBinaryResponseMat.Rd
integIRTy/tests
integIRTy/tests/easytest.R
integIRTy/tests/easytest.Rout.save
integIRTy/tests/rawtest.R
integIRTy/tests/rawtest.Rout.save
integIRTy/vignettes
integIRTy/vignettes/integIRTy.Rnw
integIRTy/vignettes/integIRTy.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.