datasets: Ovarian Cancer Datasets

In integIRTy: Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory

Ovarian Cancer Datasets

Description

Six matrices containing a subset of TCGA ovarian cancer data.

Usage

data(OV)

Format

Each of the six objects (CN_N, CN_T, Methy_N, Methy_T, Expr_N, Expr_T) is a matrix with rows for 1000 (matched) genes and columns as samples. Gene expression, methylation and copy number data for 30 tumor samples and around 10 normal samples are provided.

Source

This data is a subset of the TCGA ovarian cancer datasets. The full datasets can be downloaded through the TCGA data portal at: http://cancergenome.nih.gov/

References

Cancer Genome Atlas Research Network (2011). Integrated genomic analyses of ovarian carcinoma. Nature 474, 609-615

integIRTy documentation built on Sept. 9, 2022, 3:09 p.m.