This repository contains the latex source, graphics and R code used in book chapter in "In silico Systems Biology: A systems-based approach to understanding biological processes" published by Humana Press. This book is part of the `Methods in Molecular Biology` series. The authors of this chapter are Andrew Golightly and Colin Gillespie.

Author | Colin Gillespie |

Date of publication | 2012-10-11 13:34:49 |

Maintainer | Colin Gillespie <colin.gillespie@newcastle.ac.uk> |

License | GPL |

Version | 0.11 |

**create_model:** A mechanism for creating a stochastic kinetic model (skm)

**deterministic:** Calculates the deterministic solution of a stochastic kinetic...

**diffusion:** Runs the Euler-Maruyama approximation

**discretise:** Discretises simulator output

**gillespie:** Stochastic simulation using the standard Gillespie algorithm

**lna:** Stochastic simulation using the linear noise approximation

**multiple_sims:** Multiple stochastic simulation

**pleap:** A simple poisson leap method

issb

issb/R

issb/R/pleap.R
issb/R/lna.R
issb/R/gillespie.R
issb/R/diffusion.R
issb/R/discretise.R
issb/R/deterministic.R
issb/R/create_model.R
issb/R/multiple_sim.R
issb/NAMESPACE

issb/DESCRIPTION

issb/ChangeLog

issb/man

issb/man/create_model.Rd
issb/man/diffusion.Rd
issb/man/lna.Rd
issb/man/pleap.Rd
issb/man/discretise.Rd
issb/man/multiple_sims.Rd
issb/man/deterministic.Rd
issb/man/gillespie.Rd
issb/demo

issb/demo/00Index

issb/demo/lv.R

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