mastermix: Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures

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mastermix includes procedure for optimizing linear gaussian deconvolution model handling STR DNA mixtures. It also contain quick weight-of-evidence and database searching. Other procedures as estimation of allele drop-out probability is also included.

Author
Oyvind Bleka <Oyvind.bleka@fhi.no>
Date of publication
2014-10-06 11:23:08
Maintainer
Oyvind Bleka <Oyvind.bleka@fhi.no>
License
GPL(>=2)
Version
1.6.0

View on R-Forge

Man pages

calcDOdistr
calcDOdistr
deconvolve
deconvolve
genDataset
genDataset
getContrCombs
getContrCombs
mastermix-package
Procedure for deconvolving STR DNA mixtures
mastermixTK
mastermixTK
plotEPG
plotEPG
pvalueC
pvalueC

Files in this package

mastermix/DESCRIPTION
mastermix/NAMESPACE
mastermix/R
mastermix/R/calcDOdistr.R
mastermix/R/deconvolve.R
mastermix/R/genDataset.R
mastermix/R/getContrCombs.R
mastermix/R/mastermixTK.R
mastermix/R/plotEPG.R
mastermix/R/pvalueC.R
mastermix/inst
mastermix/inst/FreqDatabases
mastermix/inst/FreqDatabases/ESX17_Norway.csv
mastermix/inst/FreqDatabases/Identifiler_Caucasian.csv
mastermix/inst/FreqDatabases/SGMPlus_Norway.csv
mastermix/inst/FreqDatabases/SGM_German.csv
mastermix/inst/case1
mastermix/inst/case1/FreqDatabases
mastermix/inst/case1/FreqDatabases/ESX17_Norway.csv
mastermix/inst/case1/dbESX17.txt
mastermix/inst/case1/mix1.csv
mastermix/inst/case1/ref1.csv
mastermix/inst/case1/ref2.csv
mastermix/inst/case2
mastermix/inst/case2/FreqDatabases
mastermix/inst/case2/FreqDatabases/ESX17_Norway.csv
mastermix/inst/case2/FreqDatabases/Identifiler_Caucasian.csv
mastermix/inst/case2/FreqDatabases/SGMPlus_Norway.csv
mastermix/inst/case2/FreqDatabases/SGMPlus_UK.csv
mastermix/inst/case2/FreqDatabases/SGM_German.csv
mastermix/inst/case2/RA-Identifiler02.txt
mastermix/inst/case2/dbESX17.txt
mastermix/inst/case2/mix1.csv
mastermix/inst/case2/mix2.csv
mastermix/inst/case2/ref1.csv
mastermix/inst/case2/ref2.csv
mastermix/man
mastermix/man/calcDOdistr.Rd
mastermix/man/deconvolve.Rd
mastermix/man/genDataset.Rd
mastermix/man/getContrCombs.Rd
mastermix/man/mastermix-package.Rd
mastermix/man/mastermixTK.Rd
mastermix/man/plotEPG.Rd
mastermix/man/pvalueC.Rd
mastermix/src
mastermix/src/recFunCv2.c