Description Usage Arguments Details Value Author(s)

View source: R/getContrCombs.R

getContrCombs is a helpfunction to specify all possible combined genotypes for a give hypothesis.

1 2 | ```
getContrCombs(Alist, nC, symmetry = FALSE, refs = NULL, condOrder = NULL,
complete = TRUE)
``` |

`Alist` |
Vector of possible alleles |

`nC` |
Number of contributors in model. |

`symmetry` |
Boolean of whether all combinations should be considered (permutation/combination) |

`refs` |
List of contributors [[s]] where list-element 's' is the reference index with genotype vector ("A1","A2"). #' |

`condOrder` |
Specify conditioning references in refs (must be consistent order). For instance condOrder=(0,2,1,0) means that we restrict the model such that Ref2 and Ref3 are respectively conditioned as 2. contributor and 1. contributor in the model. |

`complete` |
Boolean for requiring the set of combinations to fill the Alist. |

Note: If a reference is unselected, it as numeric() in its loci

The allele-names are coded with a ascii-symbol to have threat more than 10-alleles in a loci.

A matrix where each row represents a genotype combination, while each column correspond to a contributor

Oyvind Bleka <Oyvind.Bleka.at.fhi.no>

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