Description Usage Arguments Details Value Note Author(s) References See Also Examples

~~ A concise (1-5 lines) description of what the function does. ~~

1 | ```
adaptive.bh(sorted, q, m)
``` |

`sorted` |
~~Describe |

`q` |
~~Describe |

`m` |
~~Describe |

~~ If necessary, more details than the description above ~~

~Describe the value returned If it is a LIST, use

`comp1 ` |
Description of 'comp1' |

`comp2 ` |
Description of 'comp2' |

...

~~further notes~~

~Make other sections like Warning with Warning .... ~

~~who you are~~

~put references to the literature/web site here ~

~~objects to See Also as `help`

, ~~~

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | ```
##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (sorted, q, m)
{
cat("Calling Adaptive BH \n")
flush.console
stage.one = bh(sorted, q, adjust = T, m = m)
r = sum(stage.one$Pvals[["rejected"]])
if (r == 0)
return(stage.one)
else m0 = bh.m0.estimate(sorted = sorted, m = m)
output = bh(sorted = sorted, q = q, m0 = m0, m = m)
output$Pvals[["adjusted.pvals"]] = bh.adjust(sorted, m = m,
m0 = m0)
return(output)
}
``` |

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