meta4diag: Meta-Analysis for Diagnostic Test Studies
Version 2.0.5

Bayesian inference analysis for bivariate meta-analysis of diagnostic test studies using integrated nested Laplace approximation with INLA. A purpose built graphic user interface is available. The installation of R package INLA is compulsory for successful usage. The INLA package can be obtained from . We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos="http://www.math.ntnu.no/inla/R/testing").

AuthorJingyi Guo <jingyi.guo@math.ntnu.no> and Andrea Riebler <andrea.riebler@math.ntnu.no>
Date of publication2016-07-06 13:07:00
MaintainerJingyi Guo <jingyi.guo@math.ntnu.no>
LicenseGPL
Version2.0.5
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("meta4diag", repos="http://R-Forge.R-project.org")

Popular man pages

AUC: A function that calculate the area under summary receiver...
forest: Forest plot.
funnel: Funnel plot.
makePriors: Priors for internal use.
print: print meta4diag object.
summary: Provide summary information.
table_var: The example table prior for variance.
See all...

All man pages Function index File listing

Man pages

AUC: A function that calculate the area under summary receiver...
Catheter: The Catheter Segment Culture data.
crosshair: Crosshair Plot.
fitted: Get the estimated values of accuracies for each study.
forest: Forest plot.
funnel: Funnel plot.
makeData: Make internally used data structure.
makeObject: A function used to make a 'meta4diag' object.
makePriors: Priors for internal use.
meta4diag: Function to analyse diagnostic meta-analysis with Bayesian...
meta4diagGUI: A graphic user interface for meta4diag.
plot: Default meta4diag plotting.
print: print meta4diag object.
runModel: Run the bivariate model.
Scheidler: Scheidler dataset.
SROC: A standard summary receiver operating chracteristic plot.
summary: Provide summary information.
table_cor: The example table prior for correlation.
table_var: The example table prior for variance.
Telomerase: Telomerase dataset.

Functions

AUC Man page Source code
AUC.meta4diag Man page Source code
Catheter Man page
SROC Man page Source code
SROC.meta4diag Man page Source code
Scheidler Man page
Telomerase Man page
crosshair Man page Source code
crosshair.meta4diag Man page Source code
distGammaV Source code
distPCV Source code
distTnormV Source code
findLambdas Source code
fitted Man page
fitted.meta4diag Man page Source code
forest Man page Source code
forest.grid Man page Source code
forest.grid.meta4diag Man page Source code
forest.meta4diag Man page Source code
from Source code
funnel Man page Source code
funnel.meta4diag Man page Source code
getRhoPDF Source code
hsl_to_rgb Source code
logit Source code
lprior Source code
makeData Man page Source code
makeObject Man page Source code
makePriors Man page Source code
meta4diag Man page Source code
meta4diagGUI Man page Source code
nt.density Source code
nvlogit Source code
plot.meta4diag Man page Source code
print Man page
print.fitted.meta4diag Man page Source code
print.meta4diag Man page Source code
print.summary.meta4diag Man page Source code
priorExpRhoS1 Source code
priorExpRhoS2 Source code
priorExpRhoS3 Source code
priorGammaV Source code
priorHalfCauchy Source code
priorInvWishart Source code
priorInvgamma Source code
priorPCV Source code
priorRhoBeta Source code
priorRhoBetaPlot Source code
priorRhoNormal Source code
priorRhoNormalPlot Source code
priorSigmaPC Source code
priorSigmaTnorm Source code
priorTnormV Source code
priorUniformSig Source code
rgb_to_hsl Source code
rhoPDF Source code
runModel Man page Source code
summary Man page
summary.marginal Source code
summary.meta4diag Man page Source code
summary.samples Source code
table_cor Man page
table_var Man page
thetaLPDF Source code
tlprior Source code
to Source code
writeRcode Source code

Files

DESCRIPTION
NAMESPACE
R
R/AUC.R
R/SROC.R
R/crosshair.R
R/fitted.R
R/forest.R
R/forest.grid.R
R/funnel.R
R/makeData.R
R/makeObject.R
R/makePriors.R
R/meta4diag.R
R/meta4diagGUI.R
R/plot.R
R/print.R
R/runModel.R
R/summary.R
R/uuu.R
R/zzz.R
data
data/Catheter.rda
data/Scheidler.rda
data/Telomerase.rda
data/table_cor.rda
data/table_var.rda
demo
demo/00Index
demo/Catheter.R
inst
inst/etc
inst/etc/ui.xml
inst/etc/welcometext.txt
inst/image
inst/image/linetype1.png
inst/image/linetype2.png
inst/image/linetype3.png
inst/image/linetype4.png
inst/image/linetype5.png
inst/image/linetype6.png
inst/image/linewidth1.png
inst/image/linewidth2.png
inst/image/linewidth3.png
inst/image/linewidth4.png
inst/image/linewidth5.png
inst/image/linewidth6.png
inst/image/pcex1.png
inst/image/pcex2.png
inst/image/pcex3.png
inst/image/pch1.png
inst/image/pch2.png
inst/image/pch3.png
inst/image/pointtype1.png
inst/image/refresh.png
inst/image/search.png
inst/image/sidebar_data_title.gif
inst/image/sidebar_forest_title.gif
inst/image/sidebar_funnel_title.gif
inst/image/sidebar_model_title.gif
inst/image/sidebar_prior_title.gif
inst/image/sidebar_sroc_title.gif
inst/image/sidebar_title.png
inst/meta4diagGUI
inst/meta4diagGUI/server.R
inst/meta4diagGUI/www
inst/meta4diagGUI/www/img
inst/meta4diagGUI/www/img/arrow-down.png
inst/meta4diagGUI/www/img/arrow-up.png
inst/meta4diagGUI/www/img/icon_clover.png
inst/meta4diagGUI/www/img/icon_clover2.png
inst/meta4diagGUI/www/img/icon_data.png
inst/meta4diagGUI/www/img/icon_model.png
inst/meta4diagGUI/www/img/icon_prior.png
inst/meta4diagGUI/www/img/icon_result.png
inst/meta4diagGUI/www/img/lty1.png
inst/meta4diagGUI/www/img/lty2.png
inst/meta4diagGUI/www/img/lty3.png
inst/meta4diagGUI/www/img/lty4.png
inst/meta4diagGUI/www/img/lty5.png
inst/meta4diagGUI/www/img/lty6.png
inst/meta4diagGUI/www/img/sroctype1.png
inst/meta4diagGUI/www/img/sroctype2.png
inst/meta4diagGUI/www/img/sroctype3.png
inst/meta4diagGUI/www/img/sroctype4.png
inst/meta4diagGUI/www/img/sroctype5.png
inst/meta4diagGUI/www/img/welcome1.png
inst/meta4diagGUI/www/img/welcome2.png
inst/meta4diagGUI/www/img/welcome3.png
inst/meta4diagGUI/www/index.html
inst/meta4diagGUI/www/shared
inst/meta4diagGUI/www/shared/css
inst/meta4diagGUI/www/shared/css/accordion_style.css
inst/meta4diagGUI/www/shared/css/comemnts_code.html
inst/meta4diagGUI/www/shared/css/jqmath-0.4.3.css
inst/meta4diagGUI/www/shared/css/leftbar_sideway_style.css
inst/meta4diagGUI/www/shared/css/main_notebook_style.css
inst/meta4diagGUI/www/shared/css/popup_style.css
inst/meta4diagGUI/www/shared/css/sidebar_style.css
inst/meta4diagGUI/www/shared/js
inst/meta4diagGUI/www/shared/js/ASCIIMathML.js
inst/meta4diagGUI/www/shared/js/accordion.js
inst/meta4diagGUI/www/shared/js/jqmath-0.4.3.js
inst/meta4diagGUI/www/shared/js/jqmath-etc-0.4.3.min.js
inst/meta4diagGUI/www/shared/js/jquery-1.4.3.js
inst/meta4diagGUI/www/shared/js/jquery-1.4.3.min.js
inst/meta4diagGUI/www/shared/js/jscolor.js
inst/meta4diagGUI/www/shared/js/jscolor.min.js
inst/meta4diagGUI/www/shared/js/jscurry-0.4.0.js
inst/meta4diagGUI/www/shared/js/jscurry-0.4.0.min.js
inst/meta4diagGUI/www/shared/js/validation_numeric.js
inst/txt
inst/txt/Catheter.txt
inst/txt/Telomerase.txt
man
man/AUC.Rd
man/Catheter.Rd
man/SROC.Rd
man/Scheidler.Rd
man/Telomerase.Rd
man/crosshair.Rd
man/fitted.Rd
man/forest.Rd
man/funnel.Rd
man/makeData.Rd
man/makeObject.Rd
man/makePriors.Rd
man/meta4diag.Rd
man/meta4diagGUI.Rd
man/plot.Rd
man/print.Rd
man/runModel.Rd
man/summary.Rd
man/table_cor.Rd
man/table_var.Rd
meta4diag documentation built on May 21, 2017, 12:21 a.m.

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