Files in mkin

Kinetic Evaluation of Chemical Degradation Data

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/plot.mmkin.R R/mkinerrplot.R R/nafta.R R/mmkin.R R/mkinerrmin.R R/mkinfit.R R/llhist.R R/summary.nlme.mmkin.R R/summary.mkinfit.R R/mkinds.R R/nlme.mmkin.R R/confint.mkinfit.R R/mkinparplot.R R/illparms.R R/status.R R/mean_degparms.R R/plot.mixed.mmkin.R R/summary.saem.mmkin.R R/multistart.R R/summary.mmkin.R R/mkinresplot.R R/AIC.mmkin.R R/mhmkin.R R/summary_listing.R R/parent_solutions.R R/add_err.R R/transform_odeparms.R R/mkinsub.R R/loftest.R R/logLik.mkinfit.R R/mkinmod.R R/update.mkinfit.R R/saem.R R/dimethenamid_2018.R R/set_nd_nq.R R/lrtest.mkinfit.R R/nobs.mkinfit.R R/intervals.R R/ilr.R R/create_deg_func.R R/parms.R R/nlme.R R/D24_2014.R R/mkin_long_to_wide.R R/CAKE_export.R R/read_spreadsheet.R R/mixed.mmkin.R R/aw.R R/sigma_twocomp.R R/endpoints.R R/parplot.R R/mkin_wide_to_long.R R/focus_soil_moisture.R R/max_twa_parent.R R/anova.saem.mmkin.R R/ds_mixed.R R/f_time_norm_focus.R R/plot.mkinfit.R R/residuals.mkinfit.R R/hierarchical_kinetics.R R/mkinpredict.R

inst/WORDLIST

inst/doc/twa.html

inst/doc/FOCUS_D.R inst/doc/mesotrione_parent_2023_prebuilt.pdf inst/doc/FOCUS_D.rmd inst/doc/dmta_parent_2022_prebuilt.pdf inst/doc/FOCUS_L.rmd inst/doc/FOCUS_L.R

inst/doc/dmta_pathway_2022_prebuilt.rnw

inst/doc/dmta_parent_2022_prebuilt.rnw

inst/doc/mkin.R

inst/doc/mkin.html

inst/doc/FOCUS_L.html

inst/doc/twa.rmd

inst/doc/FOCUS_D.html

inst/doc/mesotrione_parent_2023_prebuilt.rnw

inst/doc/dmta_pathway_2022_prebuilt.pdf inst/doc/mkin.rmd

inst/rmarkdown/templates/hierarchical_kinetics/template.yaml

inst/rmarkdown/templates/hierarchical_kinetics/skeleton/header.tex

inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd

inst/testdata/lambda-cyhalothrin_soil_efsa_2014.xlsx

inst/testdata/cyantraniliprole_soil_efsa_2014.xlsx

inst/testdata/mesotrione_soil_efsa_2016.xlsx

inst/testdata/fit_old_FOCUS_D.rda

inst/dataset_generation/dimethenamid_2018.R inst/dataset_generation/D24_2014.R inst/dataset_generation/focus_soil_moisture.R inst/dataset_generation/ds_mixed.R

build/vignette.rds

build/partial.rdb

tests/testthat.R

tests/testthat/summary_DFOP_FOCUS_D_eigen.txt

tests/testthat/test_aw.R

tests/testthat/experimental_data_for_UBA_2019_mkindsg.txt

tests/testthat/test_summary_old_objects.R tests/testthat/test_residuals.R

tests/testthat/print_fits_synth_const.txt

tests/testthat/test_mhmkin.R

tests/testthat/print_mmkin_parent.txt

tests/testthat/print_multistart_dfop_sfo.txt

tests/testthat/print_dfop_nlme_1.txt

tests/testthat/test_f_time_norm.R tests/testthat/test_mkinpredict_SFO_SFO.R tests/testthat/test_FOCUS_D_UBA_expertise.R

tests/testthat/FOCUS_2006_C_mkinds.txt

tests/testthat/test_compiled_symbols.R

tests/testthat/NAFTA_SOP_Appendix_D.txt

tests/testthat/test_CAKE_export.R

tests/testthat/print_dfop_saem_1.txt

tests/testthat/test_FOCUS_chi2_error_level.R tests/testthat/test_mkinmod.R tests/testthat/test_summary.R tests/testthat/test_saemix_parent.R tests/testthat/test_error_models.R tests/testthat/test_mkinds.R tests/testthat/test_from_max_mean.R tests/testthat/test_mkinfit.R

tests/testthat/FOCUS_2006_D.rds

tests/testthat/test_plot.R

tests/testthat/SFO_SFO_printed.txt

tests/testthat/summary_saem_dfop_sfo_s.txt

tests/testthat/test_SFORB.R

tests/testthat/summary_parent_FOCUS_2006.txt

tests/testthat/test_nlme.R tests/testthat/test_set_nd.R

tests/testthat/dimethenamid_2018.txt

tests/testthat/test_nafta.R

tests/testthat/print_mmkin_sfo_1_mixed.txt

tests/testthat/test_schaefer07_complex_case.R

tests/testthat/print_hfits_synth.txt

tests/testthat/summary_dfop_nlme_1.txt

tests/testthat/test_confidence.R

tests/testthat/print_mmkin_sfo_sfo_dmta.txt

tests/testthat/AIC_exp_d_3.out

tests/testthat/summary_hfit_sfo_tc.txt

tests/testthat/illparms_hfits_synth.txt

tests/testthat/test_twa.R tests/testthat/test_mkinfit_errors.R

tests/testthat/NAFTA_SOP_Appendix_B.txt

tests/testthat/test_multistart.R tests/testthat/test_analytical.R

tests/testthat/summary_DFOP_FOCUS_D_deSolve.txt

tests/testthat/test_AIC.R tests/testthat/test_tests.R

tests/testthat/print_nlmixr_saem_biphasic.txt

tests/testthat/test_logistic.R

tests/testthat/FOCUS_2006_D.csf

tests/testthat/summary_DFOP_FOCUS_C.txt

tests/testthat/test_synthetic_data_for_UBA_2014.R tests/testthat/test_mixed.R

tests/testthat/anova_sfo_saem.txt

tests/testthat/setup_script.R

tests/testthat/print_sfo_saem_1_reduced.txt

tests/testthat/test_dmta.R

tests/testthat/_snaps/plot/plot-errmod-with-focus-d-obs-eigen.svg

tests/testthat/_snaps/plot/mkinerrplot-for-focus-c-sfo.svg

tests/testthat/_snaps/plot/plot-errmod-with-focus-c-tc.svg

tests/testthat/_snaps/plot/plot-res-for-focus-c.svg

tests/testthat/_snaps/plot/plot-res-for-focus-d.svg

tests/testthat/_snaps/plot/mmkin-plot-for-focus-c.svg

tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-sep-true.svg

tests/testthat/_snaps/plot/mmkin-plot-for-sfo-focus-c-and-d.svg

tests/testthat/_snaps/plot/plot-err-for-focus-d.svg

tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-defaults.svg

tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg

tests/testthat/_snaps/plot/mixed-model-fit-for-mmkin-object.svg

tests/testthat/_snaps/plot/mixed-model-fit-for-nlme-object.svg

tests/testthat/_snaps/plot/mkinparplot-for-focus-c-sfo.svg

tests/testthat/_snaps/plot/mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg

tests/testthat/_snaps/multistart/parplot-for-sfo-fit.svg

tests/testthat/_snaps/multistart/llhist-for-dfop-sfo-fit.svg

tests/testthat/_snaps/multistart/parplot-for-dfop-sfo-fit.svg

tests/testthat/_snaps/multistart/mixed-model-fit-for-saem-object-with-mkin-transformations.svg

tests/testthat/_snaps/multistart/llhist-for-sfo-fit.svg

tests/testthat/_snaps/nafta/plot-nafta-analysis.svg

tests/testthat/_snaps/nafta/nafta-sop-appendix-b.svg

tests/testthat/slow/test_roundtrip_error_parameters.R tests/testthat/slow/test_parent_only.R vignettes/FOCUS_D.rmd vignettes/FOCUS_L.rmd

vignettes/dmta_pathway_2022_prebuilt.rnw

vignettes/references.bib

vignettes/dmta_parent_2022_prebuilt.rnw

vignettes/twa.rmd

vignettes/mesotrione_parent_2023_prebuilt.rnw

vignettes/mkin.rmd

vignettes/mkin_vignettes.css

vignettes/prebuilt/2022_cyan_pathway.pdf vignettes/prebuilt/2022_dmta_parent.pdf vignettes/prebuilt/2023_mesotrione_parent.pdf

vignettes/prebuilt/references.bib

vignettes/prebuilt/2023_mesotrione_parent.rmd vignettes/prebuilt/2022_dmta_pathway.pdf vignettes/prebuilt/2022_dmta_pathway.rmd vignettes/prebuilt/2022_cyan_pathway.rmd vignettes/prebuilt/2022_dmta_parent.rmd

data/FOCUS_2006_DFOP_ref_A_to_B.rda

data/ds_mixed.rda

data/mccall81_245T.RData

data/FOCUS_2006_FOMC_ref_A_to_F.rda

data/test_data_from_UBA_2014.rda

data/FOCUS_2006_SFO_ref_A_to_F.rda

data/NAFTA_SOP_2015.rda

data/schaefer07_complex_case.RData

data/experimental_data_for_UBA_2019.rda

data/NAFTA_SOP_Attachment.rda

data/FOCUS_2006_datasets.RData

data/FOCUS_2006_HS_ref_A_to_F.rda

data/focus_soil_moisture.rda

data/synthetic_data_for_UBA_2014.rda

data/D24_2014.rda

data/dimethenamid_2018.rda

man/anova.saem.mmkin.Rd man/logLik.mkinfit.Rd man/IORE.solution.Rd man/mkin_wide_to_long.Rd man/summary.nlme.mmkin.Rd man/nlme.mmkin.Rd man/experimental_data_for_UBA.Rd man/hierarchical_kinetics.Rd man/DFOP.solution.Rd man/plot.mixed.mmkin.Rd man/get_deg_func.Rd man/FOCUS_2006_datasets.Rd man/mkinplot.Rd man/reexports.Rd man/NAFTA_SOP_Attachment.Rd man/mean_degparms.Rd man/mkinerrmin.Rd man/ilr.Rd man/D24_2014.Rd man/nlme.Rd man/nafta.Rd man/test_data_from_UBA_2014.Rd man/mkinparplot.Rd man/CAKE_export.Rd man/aw.Rd man/nobs.mkinfit.Rd man/SFO.solution.Rd man/loftest.Rd man/add_err.Rd man/FOCUS_2006_HS_ref_A_to_F.Rd man/summary.saem.mmkin.Rd man/SFORB.solution.Rd man/parplot.Rd man/mkinresplot.Rd man/plot.mkinfit.Rd man/mkindsg.Rd man/create_deg_func.Rd man/set_nd_nq.Rd man/logistic.solution.Rd man/logLik.saem.mmkin.Rd man/synthetic_data_for_UBA_2014.Rd man/saem.Rd man/AIC.mmkin.Rd man/illparms.Rd man/max_twa_parent.Rd man/dimethenamid_2018.Rd man/multistart.Rd man/mmkin.Rd man/mkin_long_to_wide.Rd man/summary_listing.Rd man/mkinpredict.Rd man/f_time_norm_focus.Rd man/FOCUS_2006_FOMC_ref_A_to_F.Rd man/mkinmod.Rd man/llhist.Rd man/status.Rd man/Extract.mmkin.Rd man/mkinds.Rd man/schaefer07_complex_case.Rd man/parms.Rd man/ds_mixed.Rd man/sigma_twocomp.Rd man/FOMC.solution.Rd man/summary.mmkin.Rd man/focus_soil_moisture.Rd man/update.mkinfit.Rd man/mkinfit.Rd man/residuals.mkinfit.Rd man/NAFTA_SOP_2015.Rd man/confint.mkinfit.Rd man/lrtest.mkinfit.Rd man/mccall81_245T.Rd man/endpoints.Rd man/read_spreadsheet.Rd man/transform_odeparms.Rd man/mkinerrplot.Rd man/summary.mkinfit.Rd man/plot.mmkin.Rd man/HS.solution.Rd man/intervals.saem.mmkin.Rd man/FOCUS_2006_SFO_ref_A_to_F.Rd man/plot.nafta.Rd man/mixed.Rd man/mhmkin.Rd man/FOCUS_2006_DFOP_ref_A_to_B.Rd

mkin documentation built on Nov. 23, 2023, 3:02 p.m.