| add_err | Add normally distributed errors to simulated kinetic... |
| AIC.mmkin | Calculate the AIC for a column of an mmkin object |
| anova.saem.mmkin | Anova method for saem.mmkin objects |
| aw | Calculate Akaike weights for model averaging |
| CAKE_export | Export a list of datasets format to a CAKE study file |
| confint.mkinfit | Confidence intervals for parameters of mkinfit objects |
| create_deg_func | Create degradation functions for known analytical solutions |
| D24_2014 | Aerobic soil degradation data on 2,4-D from the EU assessment... |
| DFOP.solution | Double First-Order in Parallel kinetics |
| dimethenamid_2018 | Aerobic soil degradation data on dimethenamid and... |
| ds_mixed | Synthetic data for hierarchical kinetic degradation models |
| endpoints | Function to calculate endpoints for further use from kinetic... |
| experimental_data_for_UBA | Experimental datasets used for development and testing of... |
| Extract.mmkin | Subsetting method for mmkin objects |
| FOCUS_2006_datasets | Datasets A to F from the FOCUS Kinetics report from 2006 |
| FOCUS_2006_DFOP_ref_A_to_B | Results of fitting the DFOP model to Datasets A to B of FOCUS... |
| FOCUS_2006_FOMC_ref_A_to_F | Results of fitting the FOMC model to Datasets A to F of FOCUS... |
| FOCUS_2006_HS_ref_A_to_F | Results of fitting the HS model to Datasets A to F of FOCUS... |
| FOCUS_2006_SFO_ref_A_to_F | Results of fitting the SFO model to Datasets A to F of FOCUS... |
| focus_soil_moisture | FOCUS default values for soil moisture contents at field... |
| FOMC.solution | First-Order Multi-Compartment kinetics |
| f_time_norm_focus | Normalisation factors for aerobic soil degradation according... |
| get_deg_func | Retrieve a degradation function from the mmkin namespace |
| hierarchical_kinetics | Hierarchical kinetics template |
| HS.solution | Hockey-Stick kinetics |
| illparms | Method to get the names of ill-defined parameters |
| ilr | Function to perform isometric log-ratio transformation |
| intervals.saem.mmkin | Confidence intervals for parameters in saem.mmkin objects |
| IORE.solution | Indeterminate order rate equation kinetics |
| llhist | Plot the distribution of log likelihoods from multistart... |
| loftest | Lack-of-fit test for models fitted to data with replicates |
| logistic.solution | Logistic kinetics |
| logLik.mkinfit | Calculated the log-likelihood of a fitted mkinfit object |
| logLik.saem.mmkin | logLik method for saem.mmkin objects |
| lrtest.mkinfit | Likelihood ratio test for mkinfit models |
| max_twa_parent | Function to calculate maximum time weighted average... |
| mccall81_245T | Datasets on aerobic soil metabolism of 2,4,5-T in six soils |
| mean_degparms | Calculate mean degradation parameters for an mmkin row object |
| mhmkin | Fit nonlinear mixed-effects models built from one or more... |
| mixed | Create a mixed effects model from an mmkin row object |
| mkinds | A dataset class for mkin |
| mkindsg | A class for dataset groups for mkin |
| mkinerrmin | Calculate the minimum error to assume in order to pass the... |
| mkinerrplot | Function to plot squared residuals and the error model for an... |
| mkinfit | Fit a kinetic model to data with one or more state variables |
| mkin_long_to_wide | Convert a dataframe from long to wide format |
| mkinmod | Function to set up a kinetic model with one or more state... |
| mkinparplot | Function to plot the confidence intervals obtained using... |
| mkinplot | Plot the observed data and the fitted model of an mkinfit... |
| mkinpredict | Produce predictions from a kinetic model using specific... |
| mkinresplot | Function to plot residuals stored in an mkin object |
| mkin_wide_to_long | Convert a dataframe with observations over time into long... |
| mmkin | Fit one or more kinetic models with one or more state... |
| multistart | Perform a hierarchical model fit with multiple starting... |
| nafta | Evaluate parent kinetics using the NAFTA guidance |
| NAFTA_SOP_2015 | Example datasets from the NAFTA SOP published 2015 |
| NAFTA_SOP_Attachment | Example datasets from Attachment 1 to the NAFTA SOP published... |
| nlme | Helper functions to create nlme models from mmkin row objects |
| nlme.mmkin | Create an nlme model for an mmkin row object |
| nobs.mkinfit | Number of observations on which an mkinfit object was fitted |
| parms | Extract model parameters |
| parplot | Plot parameter variability of multistart objects |
| plot.mixed.mmkin | Plot predictions from a fitted nonlinear mixed model obtained... |
| plot.mkinfit | Plot the observed data and the fitted model of an mkinfit... |
| plot.mmkin | Plot model fits (observed and fitted) and the residuals for a... |
| plot.nafta | Plot the results of the three models used in the NAFTA... |
| read_spreadsheet | Read datasets and relevant meta information from a... |
| reexports | Objects exported from other packages |
| residuals.mkinfit | Extract residuals from an mkinfit model |
| saem | Fit nonlinear mixed models with SAEM |
| schaefer07_complex_case | Metabolism data set used for checking the software quality of... |
| set_nd_nq | Set non-detects and unquantified values in residue series... |
| SFORB.solution | Single First-Order Reversible Binding kinetics |
| SFO.solution | Single First-Order kinetics |
| sigma_twocomp | Two-component error model |
| status | Method to get status information for fit array objects |
| summary_listing | Display the output of a summary function according to the... |
| summary.mkinfit | Summary method for class "mkinfit" |
| summary.mmkin | Summary method for class "mmkin" |
| summary.nlme.mmkin | Summary method for class "nlme.mmkin" |
| summary.saem.mmkin | Summary method for class "saem.mmkin" |
| synthetic_data_for_UBA_2014 | Synthetic datasets for one parent compound with two... |
| test_data_from_UBA_2014 | Three experimental datasets from two water sediment systems... |
| transform_odeparms | Functions to transform and backtransform kinetic parameters... |
| update.mkinfit | Update an mkinfit model with different arguments |
