Man pages for mkin
Kinetic Evaluation of Chemical Degradation Data

add_errAdd normally distributed errors to simulated kinetic...
AIC.mmkinCalculate the AIC for a column of an mmkin object
awCalculate Akaike weights for model averaging
CAKE_exportExport a list of datasets format to a CAKE study file
confint.mkinfitConfidence intervals for parameters of mkinfit objects
create_deg_funcCreate degradation functions for known analytical solutions
DFOP.solutionDouble First-Order in Parallel kinetics
endpointsFunction to calculate endpoints for further use from kinetic...
experimental_data_for_UBAExperimental datasets used for development and testing of...
Extract.mmkinSubsetting method for mmkin objects
FOCUS_2006_datasetsDatasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_DFOP_ref_A_to_BResults of fitting the DFOP model to Datasets A to B of FOCUS...
FOCUS_2006_FOMC_ref_A_to_FResults of fitting the FOMC model to Datasets A to F of FOCUS...
FOCUS_2006_HS_ref_A_to_FResults of fitting the HS model to Datasets A to F of FOCUS...
FOCUS_2006_SFO_ref_A_to_FResults of fitting the SFO model to Datasets A to F of FOCUS...
FOMC.solutionFirst-Order Multi-Compartment kinetics
get_deg_funcRetrieve a degradation function from the mmkin namespace
HS.solutionHockey-Stick kinetics
ilrFunction to perform isometric log-ratio transformation
IORE.solutionIndeterminate order rate equation kinetics
loftestLack-of-fit test for models fitted to data with replicates
logistic.solutionLogistic kinetics
logLik.mkinfitCalculated the log-likelihood of a fitted mkinfit object
lrtest.mkinfitLikelihood ratio test for mkinfit models
max_twa_parentFunction to calculate maximum time weighted average...
mccall81_245TDatasets on aerobic soil metabolism of 2,4,5-T in six soils
mkindsA dataset class for mkin
mkinerrminCalculate the minimum error to assume in order to pass the...
mkinerrplotFunction to plot squared residuals and the error model for an...
mkinfitFit a kinetic model to data with one or more state variables
mkin_long_to_wideConvert a dataframe from long to wide format
mkinmodFunction to set up a kinetic model with one or more state...
mkinparplotFunction to plot the confidence intervals obtained using...
mkinplotPlot the observed data and the fitted model of an mkinfit...
mkinpredictProduce predictions from a kinetic model using specific...
mkinresplotFunction to plot residuals stored in an mkin object
mkinsubFunction to set up a kinetic submodel for one state variable
mkin_wide_to_longConvert a dataframe with observations over time into long...
mmkinFit one or more kinetic models with one or more state...
naftaEvaluate parent kinetics using the NAFTA guidance
NAFTA_SOP_2015Example datasets from the NAFTA SOP published 2015
NAFTA_SOP_AttachmentExample datasets from Attachment 1 to the NAFTA SOP published...
nlmeHelper functions to create nlme models from mmkin row objects
nlme.mmkinCreate an nlme model for an mmkin row object
nobs.mkinfitNumber of observations on which an mkinfit object was fitted
parmsExtract model parameters from mkinfit models
plot.mkinfitPlot the observed data and the fitted model of an mkinfit...
plot.mmkinPlot model fits (observed and fitted) and the residuals for a...
plot.naftaPlot the results of the three models used in the NAFTA...
plot.nlme.mmkinPlot a fitted nonlinear mixed model obtained via an mmkin row...
print.mkindsPrint mkinds objects
print.mkinmodPrint mkinmod objects
reexportsObjects exported from other packages
residuals.mkinfitExtract residuals from an mkinfit model
schaefer07_complex_caseMetabolism data set used for checking the software quality of...
SFORB.solutionSingle First-Order Reversible Binding kinetics
SFO.solutionSingle First-Order kinetics
sigma_twocompTwo-component error model
summary.mkinfitSummary method for class "mkinfit"
synthetic_data_for_UBA_2014Synthetic datasets for one parent compound with two...
test_data_from_UBA_2014Three experimental datasets from two water sediment systems...
transform_odeparmsFunctions to transform and backtransform kinetic parameters...
update.mkinfitUpdate an mkinfit model with different arguments
mkin documentation built on May 12, 2020, 3 a.m.