Kinetic Evaluation of Chemical Degradation Data

add_err | Add normally distributed errors to simulated kinetic... |

AIC.mmkin | Calculate the AIC for a column of an mmkin object |

aw | Calculate Akaike weights for model averaging |

CAKE_export | Export a list of datasets format to a CAKE study file |

confint.mkinfit | Confidence intervals for parameters of mkinfit objects |

create_deg_func | Create degradation functions for known analytical solutions |

DFOP.solution | Double First-Order in Parallel kinetics |

endpoints | Function to calculate endpoints for further use from kinetic... |

experimental_data_for_UBA | Experimental datasets used for development and testing of... |

Extract.mmkin | Subsetting method for mmkin objects |

FOCUS_2006_datasets | Datasets A to F from the FOCUS Kinetics report from 2006 |

FOCUS_2006_DFOP_ref_A_to_B | Results of fitting the DFOP model to Datasets A to B of FOCUS... |

FOCUS_2006_FOMC_ref_A_to_F | Results of fitting the FOMC model to Datasets A to F of FOCUS... |

FOCUS_2006_HS_ref_A_to_F | Results of fitting the HS model to Datasets A to F of FOCUS... |

FOCUS_2006_SFO_ref_A_to_F | Results of fitting the SFO model to Datasets A to F of FOCUS... |

FOMC.solution | First-Order Multi-Compartment kinetics |

get_deg_func | Retrieve a degradation function from the mmkin namespace |

HS.solution | Hockey-Stick kinetics |

ilr | Function to perform isometric log-ratio transformation |

IORE.solution | Indeterminate order rate equation kinetics |

loftest | Lack-of-fit test for models fitted to data with replicates |

logistic.solution | Logistic kinetics |

logLik.mkinfit | Calculated the log-likelihood of a fitted mkinfit object |

lrtest.mkinfit | Likelihood ratio test for mkinfit models |

max_twa_parent | Function to calculate maximum time weighted average... |

mccall81_245T | Datasets on aerobic soil metabolism of 2,4,5-T in six soils |

mkinds | A dataset class for mkin |

mkinerrmin | Calculate the minimum error to assume in order to pass the... |

mkinerrplot | Function to plot squared residuals and the error model for an... |

mkinfit | Fit a kinetic model to data with one or more state variables |

mkin_long_to_wide | Convert a dataframe from long to wide format |

mkinmod | Function to set up a kinetic model with one or more state... |

mkinparplot | Function to plot the confidence intervals obtained using... |

mkinplot | Plot the observed data and the fitted model of an mkinfit... |

mkinpredict | Produce predictions from a kinetic model using specific... |

mkinresplot | Function to plot residuals stored in an mkin object |

mkinsub | Function to set up a kinetic submodel for one state variable |

mkin_wide_to_long | Convert a dataframe with observations over time into long... |

mmkin | Fit one or more kinetic models with one or more state... |

nafta | Evaluate parent kinetics using the NAFTA guidance |

NAFTA_SOP_2015 | Example datasets from the NAFTA SOP published 2015 |

NAFTA_SOP_Attachment | Example datasets from Attachment 1 to the NAFTA SOP published... |

nlme | Helper functions to create nlme models from mmkin row objects |

nlme.mmkin | Create an nlme model for an mmkin row object |

nobs.mkinfit | Number of observations on which an mkinfit object was fitted |

parms | Extract model parameters from mkinfit models |

plot.mkinfit | Plot the observed data and the fitted model of an mkinfit... |

plot.mmkin | Plot model fits (observed and fitted) and the residuals for a... |

plot.nafta | Plot the results of the three models used in the NAFTA... |

plot.nlme.mmkin | Plot a fitted nonlinear mixed model obtained via an mmkin row... |

print.mkinds | Print mkinds objects |

print.mkinmod | Print mkinmod objects |

reexports | Objects exported from other packages |

residuals.mkinfit | Extract residuals from an mkinfit model |

schaefer07_complex_case | Metabolism data set used for checking the software quality of... |

SFORB.solution | Single First-Order Reversible Binding kinetics |

SFO.solution | Single First-Order kinetics |

sigma_twocomp | Two-component error model |

summary.mkinfit | Summary method for class "mkinfit" |

synthetic_data_for_UBA_2014 | Synthetic datasets for one parent compound with two... |

test_data_from_UBA_2014 | Three experimental datasets from two water sediment systems... |

transform_odeparms | Functions to transform and backtransform kinetic parameters... |

update.mkinfit | Update an mkinfit model with different arguments |

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