modEvA: Model Evaluation and Analysis

Analyses species distribution models and evaluates their performance. It includes functions for performing variation partitioning, calculating several measures of model discrimination and calibration, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots.

Author
Barbosa A.M., Brown J.A., Jimenez-Valverde A., Real R.
Date of publication
2016-07-14 16:37:50
Maintainer
A. Marcia Barbosa <barbosa@uevora.pt>
License
GPL-3
Version
1.3.2
URLs

View on R-Forge

Man pages

arrangePlots
Arrange plots
AUC
Area Under the ROC Curve
Dsquared
Proportion of deviance explained by a GLM
evaluate
Evaluate a GLM based on the elements of a confusion matrix.
evenness
Evenness in a binary vector.
getBins
Get bins of continuous values.
getModEqn
Get model equation
HLfit
Hosmer-Lemeshow goodness of fit
MESS
Multivariate Environmental Similarity Surfaces based on a...
MillerCalib
Miller's calibration satistics for logistic regression models
modEvAmethods
Methods implemented in modEvA functions
modEvA-package
Model Evaluation and Analysis
multModEv
Multiple model evaluation
OA
Overlap Analysis
optiPair
Optimize the discrimination threshold for a pair of related...
optiThresh
Optimize threshold for model evaluation.
plotGLM
Plot a generalized linear model
prevalence
Prevalence
range01
Shrink or stretch a vector to make it range between 0 and 1
rotif.mods
Rotifer distribution models
RsqGLM
R-squared measures for GLMs
standard01
Standardize to 0-1 (or vice-versa)
threshMeasures
Threshold-based measures of model evaluation
varPart
Variation partitioning

Files in this package

modEvA/DESCRIPTION
modEvA/NAMESPACE
modEvA/NEWS
modEvA/R
modEvA/R/AUC.R
modEvA/R/Dsquared.R
modEvA/R/HLfit.R
modEvA/R/MESS.R
modEvA/R/MillerCalib.R
modEvA/R/OA.R
modEvA/R/RsqGLM.R
modEvA/R/arrangePlots.R
modEvA/R/evaluate.R
modEvA/R/evenness.R
modEvA/R/getBins.R
modEvA/R/getModEqn.R
modEvA/R/modEvA-internal.R
modEvA/R/modEvAmethods.R
modEvA/R/multModEv.R
modEvA/R/optiPair.R
modEvA/R/optiThresh.R
modEvA/R/plotGLM.R
modEvA/R/prevalence.R
modEvA/R/range01.R
modEvA/R/standard01.R
modEvA/R/threshMeasures.R
modEvA/R/varPart.R
modEvA/data
modEvA/data/datalist
modEvA/data/rotif.mods.rda
modEvA/man
modEvA/man/AUC.Rd
modEvA/man/Dsquared.Rd
modEvA/man/HLfit.Rd
modEvA/man/MESS.Rd
modEvA/man/MillerCalib.Rd
modEvA/man/OA.Rd
modEvA/man/RsqGLM.Rd
modEvA/man/arrangePlots.Rd
modEvA/man/evaluate.Rd
modEvA/man/evenness.Rd
modEvA/man/getBins.Rd
modEvA/man/getModEqn.Rd
modEvA/man/modEvA-package.Rd
modEvA/man/modEvAmethods.Rd
modEvA/man/multModEv.Rd
modEvA/man/optiPair.Rd
modEvA/man/optiThresh.Rd
modEvA/man/plotGLM.Rd
modEvA/man/prevalence.Rd
modEvA/man/range01.Rd
modEvA/man/rotif.mods.Rd
modEvA/man/standard01.Rd
modEvA/man/threshMeasures.Rd
modEvA/man/varPart.Rd