modEvA: Model Evaluation and Analysis

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Analyses species distribution models and evaluates their performance. It includes functions for performing variation partitioning, calculating several measures of model discrimination and calibration, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots.

Author
Barbosa A.M., Brown J.A., Jimenez-Valverde A., Real R.
Date of publication
2016-07-14 16:37:50
Maintainer
A. Marcia Barbosa <barbosa@uevora.pt>
License
GPL-3
Version
1.3.2
URLs

View on R-Forge

Man pages

arrangePlots
Arrange plots
AUC
Area Under the ROC Curve
Dsquared
Proportion of deviance explained by a GLM
evaluate
Evaluate a GLM based on the elements of a confusion matrix.
evenness
Evenness in a binary vector.
getBins
Get bins of continuous values.
getModEqn
Get model equation
HLfit
Hosmer-Lemeshow goodness of fit
MESS
Multivariate Environmental Similarity Surfaces based on a...
MillerCalib
Miller's calibration satistics for logistic regression models
modEvAmethods
Methods implemented in modEvA functions
modEvA-package
Model Evaluation and Analysis
multModEv
Multiple model evaluation
OA
Overlap Analysis
optiPair
Optimize the discrimination threshold for a pair of related...
optiThresh
Optimize threshold for model evaluation.
plotGLM
Plot a generalized linear model
prevalence
Prevalence
range01
Shrink or stretch a vector to make it range between 0 and 1
rotif.mods
Rotifer distribution models
RsqGLM
R-squared measures for GLMs
standard01
Standardize to 0-1 (or vice-versa)
threshMeasures
Threshold-based measures of model evaluation
varPart
Variation partitioning

Files in this package

modEvA/DESCRIPTION
modEvA/NAMESPACE
modEvA/NEWS
modEvA/R
modEvA/R/AUC.R
modEvA/R/Dsquared.R
modEvA/R/HLfit.R
modEvA/R/MESS.R
modEvA/R/MillerCalib.R
modEvA/R/OA.R
modEvA/R/RsqGLM.R
modEvA/R/arrangePlots.R
modEvA/R/evaluate.R
modEvA/R/evenness.R
modEvA/R/getBins.R
modEvA/R/getModEqn.R
modEvA/R/modEvA-internal.R
modEvA/R/modEvAmethods.R
modEvA/R/multModEv.R
modEvA/R/optiPair.R
modEvA/R/optiThresh.R
modEvA/R/plotGLM.R
modEvA/R/prevalence.R
modEvA/R/range01.R
modEvA/R/standard01.R
modEvA/R/threshMeasures.R
modEvA/R/varPart.R
modEvA/data
modEvA/data/datalist
modEvA/data/rotif.mods.rda
modEvA/man
modEvA/man/AUC.Rd
modEvA/man/Dsquared.Rd
modEvA/man/HLfit.Rd
modEvA/man/MESS.Rd
modEvA/man/MillerCalib.Rd
modEvA/man/OA.Rd
modEvA/man/RsqGLM.Rd
modEvA/man/arrangePlots.Rd
modEvA/man/evaluate.Rd
modEvA/man/evenness.Rd
modEvA/man/getBins.Rd
modEvA/man/getModEqn.Rd
modEvA/man/modEvA-package.Rd
modEvA/man/modEvAmethods.Rd
modEvA/man/multModEv.Rd
modEvA/man/optiPair.Rd
modEvA/man/optiThresh.Rd
modEvA/man/plotGLM.Rd
modEvA/man/prevalence.Rd
modEvA/man/range01.Rd
modEvA/man/rotif.mods.Rd
modEvA/man/standard01.Rd
modEvA/man/threshMeasures.Rd
modEvA/man/varPart.Rd