modEvA: Model Evaluation and Analysis
Version 1.3.3

Analyses species distribution models and evaluates their performance. It includes functions for performing variation partitioning, calculating several measures of model discrimination and calibration, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots.

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AuthorBarbosa A.M., Brown J.A., Jimenez-Valverde A., Real R.
Date of publication2017-03-24 18:36:16
MaintainerA. Marcia Barbosa <barbosa@uevora.pt>
LicenseGPL-3
Version1.3.3
URL http://modeva.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("modEvA", repos="http://R-Forge.R-project.org")

Man pages

arrangePlots: Arrange plots
AUC: Area Under the ROC Curve
Dsquared: Proportion of deviance explained by a GLM
evaluate: Evaluate a GLM based on the elements of a confusion matrix.
evenness: Evenness in a binary vector.
getBins: Get bins of continuous values.
getModEqn: Get model equation
HLfit: Hosmer-Lemeshow goodness of fit
MESS: Multivariate Environmental Similarity Surfaces based on a...
MillerCalib: Miller's calibration satistics for logistic regression models
modEvAmethods: Methods implemented in modEvA functions
modEvA-package: Model Evaluation and Analysis
multModEv: Multiple model evaluation
OA: Overlap Analysis
optiPair: Optimize the discrimination threshold for a pair of related...
optiThresh: Optimize threshold for model evaluation.
plotGLM: Plot a generalized linear model
prevalence: Prevalence
range01: Shrink or stretch a vector to make it range between 0 and 1
rotif.mods: Rotifer distribution models
RsqGLM: R-squared measures for GLMs
standard01: Standardize to 0-1 (or vice-versa)
threshMeasures: Threshold-based measures of model evaluation
varPart: Variation partitioning

Functions

AUC Man page Source code
Dsquared Man page Source code
HLfit Man page Source code
MESS Man page Source code
MillerCalib Man page Source code
OA Man page Source code
RsqGLM Man page Source code
arrangePlots Man page Source code
evaluate Man page Source code
evenness Man page Source code
getBins Man page Source code
getModEqn Man page Source code
modEvA Man page
modEvA-package Man page
modEvAmethods Man page Source code Source code
multModEv Man page Source code
optiPair Man page Source code
optiThresh Man page Source code
plotGLM Man page Source code
prevalence Man page Source code
range01 Man page Source code
rotif.mods Man page
standard01 Man page Source code
threshMeasures Man page Source code
varPart Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/AUC.R
R/Dsquared.R
R/HLfit.R
R/MESS.R
R/MillerCalib.R
R/OA.R
R/RsqGLM.R
R/arrangePlots.R
R/evaluate.R
R/evenness.R
R/getBins.R
R/getModEqn.R
R/modEvA-internal.R
R/modEvAmethods.R
R/multModEv.R
R/optiPair.R
R/optiThresh.R
R/plotGLM.R
R/prevalence.R
R/range01.R
R/standard01.R
R/threshMeasures.R
R/varPart.R
data
data/datalist
data/rotif.mods.rda
man
man/AUC.Rd
man/Dsquared.Rd
man/HLfit.Rd
man/MESS.Rd
man/MillerCalib.Rd
man/OA.Rd
man/RsqGLM.Rd
man/arrangePlots.Rd
man/evaluate.Rd
man/evenness.Rd
man/getBins.Rd
man/getModEqn.Rd
man/modEvA-package.Rd
man/modEvAmethods.Rd
man/multModEv.Rd
man/optiPair.Rd
man/optiThresh.Rd
man/plotGLM.Rd
man/prevalence.Rd
man/range01.Rd
man/rotif.mods.Rd
man/standard01.Rd
man/threshMeasures.Rd
man/varPart.Rd
modEvA documentation built on May 21, 2017, 12:30 a.m.