mqqc: Quality control of LCMS derived proteomic data

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quality control of evidence data derived from maxquant analysis

Author
Henrik Zauber
Date of publication
2016-08-04 07:34:55
Maintainer
Henrik Zauber <henrik.zauber@mdc-berlin.net>
License
GNU something
Version
2.170

View on R-Forge

Man pages

folder.observe
Loop function to observe a "hot" folder.
mqqc-package
Quality control of MaxQuant derived proteomic data.
start.qc
Quality analysis of evidence.txt

Files in this package

mqqc/DESCRIPTION
mqqc/NAMESPACE
mqqc/Ohne Titel.R
mqqc/R
mqqc/R/ASCIIprofileplot.R
mqqc/R/BackupRestoreSettings.R
mqqc/R/CheckFastaDB.R
mqqc/R/CleanHtml.R
mqqc/R/CleaningFun.R
mqqc/R/CompareComplexStdFromTable.R
mqqc/R/CompareLowComplexStdFromTable.R
mqqc/R/FUNFINAL.R
mqqc/R/HtmlTable.R
mqqc/R/LoadSettings.R
mqqc/R/MQdbadder.R
mqqc/R/MQmanager.R
mqqc/R/MailImport.R
mqqc/R/MailOverPerl.R
mqqc/R/PIDhtmltable.R
mqqc/R/PairsFun.R
mqqc/R/PlotTwoFun.R
mqqc/R/PrepareMail.R
mqqc/R/ProgressTracker.R
mqqc/R/SendMailFun.R
mqqc/R/SpeciesStatistic.R
mqqc/R/ThreadControl.R
mqqc/R/ThreshCompare.R
mqqc/R/WriteChromatogram.R
mqqc/R/archiveProcessedFolder.R
mqqc/R/barplot.fun.R
mqqc/R/catFun.R
mqqc/R/check.file.changing.R
mqqc/R/checkMqqcInfo.R
mqqc/R/checkSize.R
mqqc/R/checkSpeciesTable.R
mqqc/R/cluster.plot.R
mqqc/R/col.Ramp.R
mqqc/R/col.grad.R
mqqc/R/combi.mq.qc.R
mqqc/R/createWindows.R
mqqc/R/displayInTable.R
mqqc/R/empty.plot.R
mqqc/R/evidenceCheck.R
mqqc/R/fixMailList.R
mqqc/R/folder.observe.R
mqqc/R/fun.R
mqqc/R/graph.layout.change.R
mqqc/R/grep.col.R
mqqc/R/grep.fun.R
mqqc/R/grepRE.R
mqqc/R/grepSubsetControl.R
mqqc/R/htmlMod.R
mqqc/R/initFastaMQ.R
mqqc/R/list.files.nodir.R
mqqc/R/listFiles.R
mqqc/R/listFolders.R
mqqc/R/medwin.R
mqqc/R/merge.control.R
mqqc/R/mq.fun.R
mqqc/R/mqStarter.R
mqqc/R/mqqc.folder.control.R
mqqc/R/mqqcGUI.R
mqqc/R/msmsPlot.R
mqqc/R/path.convert.R
mqqc/R/plot.SpeciesStatistics.R
mqqc/R/plot.evidence.R
mqqc/R/plot.profile.R
mqqc/R/plot.quans.R
mqqc/R/plot.scores.R
mqqc/R/plot.stat.R
mqqc/R/plotMsFun.R
mqqc/R/plotPol.R
mqqc/R/plottingTimeLineFunction.R
mqqc/R/qc.evidence.R
mqqc/R/qc.prepare.R
mqqc/R/ramp.R
mqqc/R/round.spec.R
mqqc/R/search.evidence.R
mqqc/R/speciesFunFix.R
mqqc/R/speciesTK.R
mqqc/R/start.qc.R
mqqc/R/stringSplitter.R
mqqc/R/strsplitslot.R
mqqc/R/subgroupFDRgenericDB.R
mqqc/R/successDelete.R
mqqc/R/tkControl.R
mqqc/R/unfactor.R
mqqc/R/unlist.fun.R
mqqc/R/wait.copy.fun.R
mqqc/R/writeToHtml.R
mqqc/R/xml.mod.R
mqqc/R/xml.replace.R
mqqc/R/zero.return.R
mqqc/data
mqqc/data/ApexCutsID.rda
mqqc/data/ArtificDB.rda
mqqc/data/DataEvidence.rda
mqqc/data/Ecoli_K12-MG1655.fasta
mqqc/data/GDB.xml
mqqc/data/MQQCspecies.csv.gz
mqqc/data/MQQCspecies.txt.gz
mqqc/data/NameCounts.rda
mqqc/data/contaminants.csv.bz2
mqqc/data/datalist
mqqc/data/example.css
mqqc/data/html
mqqc/data/html.zip
mqqc/data/html/MQQC-Documentation.pdf
mqqc/data/html/example.css
mqqc/data/html/green
mqqc/data/html/green/PB.gif
mqqc/data/html/green/asc.png
mqqc/data/html/green/bg.png
mqqc/data/html/green/desc.png
mqqc/data/html/green/style.css
mqqc/data/html/tablesorter
mqqc/data/html/tablesorter/jquery.tablesorter.min.js
mqqc/data/init_mqpar_lf.xml
mqqc/data/init_mqpar_lf_1.3.xml
mqqc/data/mailPerl.pl
mqqc/data/tabber.js
mqqc/data/uniref90mycoOnlyName.fasta
mqqc/man
mqqc/man/folder.observe.Rd
mqqc/man/mqqc-package.Rd
mqqc/man/start.qc.Rd
mqqc/temp
mqqc/temp/check.size.R
mqqc/temp/checkSize.R
mqqc/temp/description
mqqc/temp/description/MQmanager.Rd
mqqc/temp/description/barplot.fun.Rd
mqqc/temp/description/catFun.Rd
mqqc/temp/description/check.file.changing.Rd
mqqc/temp/description/checkMqqcInfo.Rd
mqqc/temp/description/checkSize.Rd
mqqc/temp/description/cluster.plot.Rd
mqqc/temp/description/col.Ramp.Rd
mqqc/temp/description/col.grad.Rd
mqqc/temp/description/combi.mq.qc.Rd
mqqc/temp/description/empty.plot.Rd
mqqc/temp/description/evidenceCheck.Rd
mqqc/temp/description/fun.Rd
mqqc/temp/description/graph.layout.change.Rd
mqqc/temp/description/grep.col.Rd
mqqc/temp/description/grep.fun.Rd
mqqc/temp/description/grepSubsetControl.Rd
mqqc/temp/description/initFastaMQ.Rd
mqqc/temp/description/list.files.nodir.Rd
mqqc/temp/description/listFiles.Rd
mqqc/temp/description/listFolders.Rd
mqqc/temp/description/mq.fun.Rd
mqqc/temp/description/mqStarter.Rd
mqqc/temp/description/mqqc.folder.control.Rd
mqqc/temp/description/path.convert.Rd
mqqc/temp/description/plot.evidence.Rd
mqqc/temp/description/plot.profile.Rd
mqqc/temp/description/plot.quans.Rd
mqqc/temp/description/plot.scores.Rd
mqqc/temp/description/plot.stat.Rd
mqqc/temp/description/qc.evidence.Rd
mqqc/temp/description/qc.prepare.Rd
mqqc/temp/description/ramp.Rd
mqqc/temp/description/round.spec.Rd
mqqc/temp/description/search.evidence.Rd
mqqc/temp/description/tkControl.Rd
mqqc/temp/description/unlist.fun.Rd
mqqc/temp/description/wait.copy.fun.Rd
mqqc/temp/description/xml.mod.Rd
mqqc/temp/description/xml.replace.Rd
mqqc/temp/description/zero.return.Rd
mqqc/temp/file.ready.R
mqqc/temp/folder.observe.R
mqqc/temp/initFUN.R
mqqc/temp/mq.fun.R
mqqc/temp/mqStarter.R
mqqc/temp/mqqc.folder.control.R
mqqc/temp/start.mqqc.R
mqqc/temp/testtemp.R
mqqc/temp/wait.copy.fun.R
mqqc/temp/windowsTest.R
mqqc/temp/xml-test
mqqc/temp/xml-test.R
mqqc/temp/xml.mod.R
mqqc/temp/xmlstart-test.R