Constructs non-additive genetic relationship matrices from a pedigree. These and their inverses can be passed to a linear mixed effect model, known as the 'animal model'.
|Date of publication||None|
|Maintainer||Matthew Wolak <email@example.com>|
aiFun: Sampling (co)variances and correlations
choose: Internal function for 'makeDsim'
constrainFun: Function used in the 'proLik' function to produce a profile...
DFC: Indicates Double First Cousins
findBetween: Determines how close estimates are to a true value
findDFC: Finds the double first cousins in a pedigree
genAssign: Generation assignment
IBD: Identical by descent
IBD2: Identity by descent helper function
makeA: Creates the additive genetic relationship matrix
makeAA: Creates the additive by additive epistatic genetic...
makeD: Creates the dominance genetic realationship matrix
makeDomEpi: Creates the additive by dominance and dominance by dominance...
makeDsim: Creates the dominance genetic relationship matrix through...
Mrode2: Pedigree from Table 2.1 of Mrode (2005)
Mrode9: Pedigree, adapted from example 9.1 of Mrode (2005)
nadiv-package: Functions to create non-additive relationship matrices and...
numPed: Creates a numeric form of a pedigree
plot.proLik: Graphically depicts the profile Likelihood
proLik: Estimates the profile likelihood of a random effect
SEfun: Estimate of the standard error for a simulated coefficient of...
sm2list: Converts a sparse matrix into a three column format.
vchoose: Helper function for another internal function in 'makeDsim'
warcolak: Pedigree and phenotypic values for a mythical population of...