aiFun | Sampling (co)variances and correlations |
choose | Internal function for 'makeDsim' |
constrainFun | Function used in the 'proLik' function to produce a profile... |
DFC | Indicates Double First Cousins |
findBetween | Determines how close estimates are to a true value |
findDFC | Finds the double first cousins in a pedigree |
genAssign | Generation assignment |
IBD | Identical by descent |
IBD2 | Identity by descent helper function |
makeA | Creates the additive genetic relationship matrix |
makeAA | Creates the additive by additive epistatic genetic... |
makeD | Creates the dominance genetic realationship matrix |
makeDomEpi | Creates the additive by dominance and dominance by dominance... |
makeDsim | Creates the dominance genetic relationship matrix through... |
Mrode2 | Pedigree from Table 2.1 of Mrode (2005) |
Mrode9 | Pedigree, adapted from example 9.1 of Mrode (2005) |
nadiv-package | Functions to create non-additive relationship matrices and... |
numPed | Creates a numeric form of a pedigree |
plot.proLik | Graphically depicts the profile Likelihood |
proLik | Estimates the profile likelihood of a random effect |
SEfun | Estimate of the standard error for a simulated coefficient of... |
sm2list | Converts a sparse matrix into a three column format. |
vchoose | Helper function for another internal function in 'makeDsim' |
warcolak | Pedigree and phenotypic values for a mythical population of... |
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