Functions to construct non-additive genetic relatedness matrices

aiFun | Sampling (co)variances and correlations |

choose | Internal function for 'makeDsim' |

constrainFun | Function used in the 'proLik' function to produce a profile... |

DFC | Indicates Double First Cousins |

findBetween | Determines how close estimates are to a true value |

findDFC | Finds the double first cousins in a pedigree |

genAssign | Generation assignment |

IBD | Identical by descent |

IBD2 | Identity by descent helper function |

makeA | Creates the additive genetic relationship matrix |

makeAA | Creates the additive by additive epistatic genetic... |

makeD | Creates the dominance genetic realationship matrix |

makeDomEpi | Creates the additive by dominance and dominance by dominance... |

makeDsim | Creates the dominance genetic relationship matrix through... |

Mrode2 | Pedigree from Table 2.1 of Mrode (2005) |

Mrode9 | Pedigree, adapted from example 9.1 of Mrode (2005) |

nadiv-package | Functions to create non-additive relationship matrices and... |

numPed | Creates a numeric form of a pedigree |

plot.proLik | Graphically depicts the profile Likelihood |

proLik | Estimates the profile likelihood of a random effect |

SEfun | Estimate of the standard error for a simulated coefficient of... |

sm2list | Converts a sparse matrix into a three column format. |

vchoose | Helper function for another internal function in 'makeDsim' |

warcolak | Pedigree and phenotypic values for a mythical population of... |

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