plotMotifs: Print to screen in latex format of motif statistics

In netmes: Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures

Description

This function takes the object res (that includes all the explored statistics) and outputs the table in latex format that includes standard deviation, mean and the sum of edges.# ***

Usage

plotMotifs(res)

Arguments

res	an object of class '"res"' which is a list with components: # *** .

Value

plotMotifs returns the table in latex format.

References

Gokmen Altay and Frank Emmert-Streib. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics, 2010, 26(14),1738-1744.

Frank Emmert-Streib, Gokmen Altay. Local network-based measures to assess the inferability of different regulatory networks. IET Syst. Biol. 2010, Volume 4, Issue 4, p.277-288.

See Also

motifcount3, evalnetworksNames

Examples

# E <- 5 # number of experiments (data sets)

# infile <- "./netmes/data/networkDAG.sif"
# infilepath <- "./netmes/data/syn/"
# This is an example path. Change this path wrt the path of data in your computer.

# net <- readNet(infile, infilepath) # true network (+1 edge/ activator - -1 edges/repr.)

# res <- evalnetworks(E, net, infilepath)

# res2 <- motifcount3(net, res$rmat, res$aveMImat)

# plotMotifs(res2)

netmes documentation built on May 2, 2019, 5:21 p.m.