Description Usage Arguments Value References See Also Examples
This function takes the object res (that includes all the explored statistics) and outputs the table in latex format that includes standard deviation, mean and the sum of edges.# ***
1 | plotMotifs(res)
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res |
an object of class '"res"' which is a list with components: # *** . |
plotMotifs
returns the table in latex format.
Gokmen Altay and Frank Emmert-Streib. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics, 2010, 26(14),1738-1744.
Frank Emmert-Streib, Gokmen Altay. Local network-based measures to assess the inferability of different regulatory networks. IET Syst. Biol. 2010, Volume 4, Issue 4, p.277-288.
motifcount3
, evalnetworksNames
1 2 3 4 5 6 7 8 9 10 11 12 13 | # E <- 5 # number of experiments (data sets)
# infile <- "./netmes/data/networkDAG.sif"
# infilepath <- "./netmes/data/syn/"
# This is an example path. Change this path wrt the path of data in your computer.
# net <- readNet(infile, infilepath) # true network (+1 edge/ activator - -1 edges/repr.)
# res <- evalnetworks(E, net, infilepath)
# res2 <- motifcount3(net, res$rmat, res$aveMImat)
# plotMotifs(res2)
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