sumdeg: Sum of degree calculation for each node

In netmes: Exploratory Analysis of Gene Networks with Netmes, An R package for network-based measures

Description

This function takes the adjacency matrix, and calculate sum of degrees.

Usage

sumdeg(net)

Arguments

net	adjacency matrix of genes (not symmetric).

Details

It only considers all edges.

Value

sumdeg returns sum of degrees of noes as Sm

References

Gokmen Altay and Frank Emmert-Streib. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics, 2010, 26(14),1738-1744.

Frank Emmert-Streib, Gokmen Altay. Local network-based measures to assess the inferability of different regulatory networks. IET Syst. Biol. 2010, Volume 4, Issue 4, p.277-288.

See Also

plotMotifs, evalnetworks, evalnetworksNames

Examples

# E <- 5 # number of experiments (data sets)

# infile <- "./netmes/data/networkDAG.sif"
# infilepath <- "./netmes/data/syn/"

# net <- readNet(infile, infilepath) # true network (+1 edge/ activator - -1 edges/repr.)

# Sm <- sumdeg(net)

netmes documentation built on May 2, 2019, 5:21 p.m.