Description Usage Arguments Details Value References See Also Examples
This function takes the adjacency matrix, and calculate sum of degrees.
1 | sumdeg(net)
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net |
adjacency matrix of genes (not symmetric). |
It only considers all edges.
sumdeg
returns sum of degrees of noes as Sm
Gokmen Altay and Frank Emmert-Streib. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics, 2010, 26(14),1738-1744.
Frank Emmert-Streib, Gokmen Altay. Local network-based measures to assess the inferability of different regulatory networks. IET Syst. Biol. 2010, Volume 4, Issue 4, p.277-288.
plotMotifs
, evalnetworks
, evalnetworksNames
1 2 3 4 5 6 7 8 | # E <- 5 # number of experiments (data sets)
# infile <- "./netmes/data/networkDAG.sif"
# infilepath <- "./netmes/data/syn/"
# net <- readNet(infile, infilepath) # true network (+1 edge/ activator - -1 edges/repr.)
# Sm <- sumdeg(net)
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