This function does MCMC diagnostics, producing several plots related to Gelman diagnostics, and optionally a plot for the Geweke statistics (though this doesn't converge sometimes).
1 | McmcDiagnosticsPlot(McmcList, parToMonitor, FileName, Folder=NA, Geweke=FALSE,...)
|
McmcList |
An MCMC list object of model parameters |
parToMonitor |
Which parameter(s) of the fitted model object were monitored / estimated |
FileName |
Species and model specific, where the outupt will be generated to |
Folder |
Folder for output |
Geweke |
Whether to also calculate Geweke diagnostics, defaults to FALSE |
... |
Other arguments can be passed. |
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