MCMCDiagnosticsPlot: McmcDiagnosticsPlot does Gelman-Rubin and optionally Geweke...

Description Usage Arguments

Description

This function does MCMC diagnostics, producing several plots related to Gelman diagnostics, and optionally a plot for the Geweke statistics (though this doesn't converge sometimes).

Usage

1
McmcDiagnosticsPlot(McmcList, parToMonitor, FileName, Folder=NA, Geweke=FALSE,...)

Arguments

McmcList

An MCMC list object of model parameters

parToMonitor

Which parameter(s) of the fitted model object were monitored / estimated

FileName

Species and model specific, where the outupt will be generated to

Folder

Folder for output

Geweke

Whether to also calculate Geweke diagnostics, defaults to FALSE

...

Other arguments can be passed.


nwfscDeltaGLM documentation built on May 2, 2019, 6:30 p.m.