oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output

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Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.

Author
Brandon Whitcher, Volker Schmid and Andrew Thornton, with contributions by Karsten Tabelow and Jon Clayden
Date of publication
2015-01-17 15:39:57
Maintainer
Brandon Whitcher <bwhitcher@gmail.com>
License
BSD_3_clause + file LICENSE
Version
0.4.3
URLs

View on R-Forge

Man pages

afni
is.afni
afni-class
Class "afni"
anlz
Constructor for Analyze
anlz-class
Class "anlz"
as_nifti
as.nifti
audit_trail
Facilitate the Creation and Modification of Audit Trails
audit_trail-methods
Extract or Replace NIfTI Audit Trail
aux_file-methods
Extract or Replace NIfTI/Analyze Auxiliary File
bitwise
Bitwise Conversion Subroutines
calmin-methods
Extract or Replace NIfTI/Analyze Min or Max Values
coerce-methods
Force an Object to Belong to the ANALYZE or NIfTI Class
convert_afni
Convert AFNI data codes
convert_anlz
Convert NIfTI Codes
convert_nifti
Convert NIfTI Codes
descrip-methods
Extract or Replace NIfTI/Analyze Description
hotmetal
Hot Metal Color Table
image-methods
Methods for Function 'image'
integerTranslation
integerTranslation
miscellaneous
Dimension Accessor Functions
nifti
Constructor for NIfTI
nifti_assign-methods
~~ Methods for Function [<- in Package 'base' ~~
niftiAuditTrail-class
Class "niftiAuditTrail"
nifti-class
Class "nifti"
niftiExtension-class
Class "niftiExtension"
niftiExtensionSection-class
Class "niftiExtensionSection"
orthographic-methods
Methods for Function 'orthographic' in Package 'dcemriS4'
overlay-methods
Methods for Function overlay
performPermutation
performPermutation
pixdim-methods
Extract or Replace NIfTI/Analyze Pixel Dimensions
q2R
Convert Quaternion into a Rotation Matrix
qformsform
Extract NIfTI 3D Image Orientation
read_afni
readAFNI
read_anlz
readANALYZE
read_nifti
readNIfTI
remove
Remove File Extensions Around the NIfTI/ANALYZE Formats
reorient
reorient
tim_colors
Tim's Useful Color Table
transformCoordinate
translateCoordinate
write_afni
writeAFNI
write_anlz
writeANALYZE
write_nifti
writeNIfTI

Files in this package

oro.nifti/DESCRIPTION
oro.nifti/LICENSE
oro.nifti/NAMESPACE
oro.nifti/R
oro.nifti/R/afniS4.R
oro.nifti/R/analyzeS4.R
oro.nifti/R/auditTrail.R
oro.nifti/R/convert_anlz.R
oro.nifti/R/convert_nifti.R
oro.nifti/R/hotmetal.R
oro.nifti/R/miscellaneous.R
oro.nifti/R/niftiS4.R
oro.nifti/R/plot.R
oro.nifti/R/readS4.R
oro.nifti/R/remove.R
oro.nifti/R/tim_colors.R
oro.nifti/R/transform.R
oro.nifti/R/wrappers.R
oro.nifti/R/writeS4.R
oro.nifti/R/zzz.R
oro.nifti/build
oro.nifti/build/vignette.rds
oro.nifti/demo
oro.nifti/demo/00Index
oro.nifti/demo/avg152T1.R
oro.nifti/demo/avg152T1LR.R
oro.nifti/demo/avg152T1RL.R
oro.nifti/demo/filtered_func_data.R
oro.nifti/inst
oro.nifti/inst/CITATION
oro.nifti/inst/afni
oro.nifti/inst/afni/ARzs_CW_avvr.DEL+orig.BRIK
oro.nifti/inst/afni/ARzs_CW_avvr.DEL+orig.HEAD
oro.nifti/inst/afni/TT_N27_EZ_LR+tlrc.BRIK.gz
oro.nifti/inst/afni/TT_N27_EZ_LR+tlrc.HEAD
oro.nifti/inst/anlz
oro.nifti/inst/anlz/avg152T1.hdr.gz
oro.nifti/inst/anlz/avg152T1.img.gz
oro.nifti/inst/doc
oro.nifti/inst/doc/ANALYZE75.pdf
oro.nifti/inst/doc/nifti.R
oro.nifti/inst/doc/nifti.Rnw
oro.nifti/inst/doc/nifti.pdf
oro.nifti/inst/nifti
oro.nifti/inst/nifti/filtered_func_data.nii.gz
oro.nifti/inst/nifti/mniLR.nii.gz
oro.nifti/inst/nifti/mniRL.nii.gz
oro.nifti/inst/nifti/zstat1.nii.gz
oro.nifti/man
oro.nifti/man/afni-class.Rd
oro.nifti/man/afni.Rd
oro.nifti/man/anlz-class.Rd
oro.nifti/man/anlz.Rd
oro.nifti/man/as_nifti.Rd
oro.nifti/man/audit_trail-methods.Rd
oro.nifti/man/audit_trail.Rd
oro.nifti/man/aux_file-methods.Rd
oro.nifti/man/bitwise.Rd
oro.nifti/man/calmin-methods.Rd
oro.nifti/man/coerce-methods.Rd
oro.nifti/man/convert_afni.Rd
oro.nifti/man/convert_anlz.Rd
oro.nifti/man/convert_nifti.Rd
oro.nifti/man/descrip-methods.Rd
oro.nifti/man/hotmetal.Rd
oro.nifti/man/image-methods.Rd
oro.nifti/man/integerTranslation.Rd
oro.nifti/man/miscellaneous.Rd
oro.nifti/man/nifti-class.Rd
oro.nifti/man/nifti.Rd
oro.nifti/man/niftiAuditTrail-class.Rd
oro.nifti/man/niftiExtension-class.Rd
oro.nifti/man/niftiExtensionSection-class.Rd
oro.nifti/man/nifti_assign-methods.Rd
oro.nifti/man/orthographic-methods.Rd
oro.nifti/man/overlay-methods.Rd
oro.nifti/man/performPermutation.Rd
oro.nifti/man/pixdim-methods.Rd
oro.nifti/man/q2R.Rd
oro.nifti/man/qformsform.Rd
oro.nifti/man/read_afni.Rd
oro.nifti/man/read_anlz.Rd
oro.nifti/man/read_nifti.Rd
oro.nifti/man/remove.Rd
oro.nifti/man/reorient.Rd
oro.nifti/man/tim_colors.Rd
oro.nifti/man/transformCoordinate.Rd
oro.nifti/man/write_afni.Rd
oro.nifti/man/write_anlz.Rd
oro.nifti/man/write_nifti.Rd
oro.nifti/tests
oro.nifti/tests/Examples
oro.nifti/tests/Examples/oro.nifti-Ex.Rout.save
oro.nifti/vignettes
oro.nifti/vignettes/nifti.Rnw
oro.nifti/vignettes/nifti.bib