oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output

Functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.

AuthorBrandon Whitcher, Volker Schmid and Andrew Thornton, with contributions by Karsten Tabelow and Jon Clayden
Date of publication2015-01-17 15:39:57
MaintainerBrandon Whitcher <bwhitcher@gmail.com>
LicenseBSD_3_clause + file LICENSE
Version0.4.3
http://rig.oro.us.com
http://rigorousanalytics.blogspot.com

View on R-Forge

Man pages

afni: is.afni

afni-class: Class "afni"

anlz: Constructor for Analyze

anlz-class: Class "anlz"

as_nifti: as.nifti

audit_trail: Facilitate the Creation and Modification of Audit Trails

audit_trail-methods: Extract or Replace NIfTI Audit Trail

aux_file-methods: Extract or Replace NIfTI/Analyze Auxiliary File

bitwise: Bitwise Conversion Subroutines

calmin-methods: Extract or Replace NIfTI/Analyze Min or Max Values

coerce-methods: Force an Object to Belong to the ANALYZE or NIfTI Class

convert_afni: Convert AFNI data codes

convert_anlz: Convert NIfTI Codes

convert_nifti: Convert NIfTI Codes

descrip-methods: Extract or Replace NIfTI/Analyze Description

hotmetal: Hot Metal Color Table

image-methods: Methods for Function 'image'

integerTranslation: integerTranslation

miscellaneous: Dimension Accessor Functions

nifti: Constructor for NIfTI

nifti_assign-methods: ~~ Methods for Function [<- in Package 'base' ~~

niftiAuditTrail-class: Class "niftiAuditTrail"

nifti-class: Class "nifti"

niftiExtension-class: Class "niftiExtension"

niftiExtensionSection-class: Class "niftiExtensionSection"

orthographic-methods: Methods for Function 'orthographic' in Package 'dcemriS4'

overlay-methods: Methods for Function overlay

performPermutation: performPermutation

pixdim-methods: Extract or Replace NIfTI/Analyze Pixel Dimensions

q2R: Convert Quaternion into a Rotation Matrix

qformsform: Extract NIfTI 3D Image Orientation

read_afni: readAFNI

read_anlz: readANALYZE

read_nifti: readNIfTI

remove: Remove File Extensions Around the NIfTI/ANALYZE Formats

reorient: reorient

tim_colors: Tim's Useful Color Table

transformCoordinate: translateCoordinate

write_afni: writeAFNI

write_anlz: writeANALYZE

write_nifti: writeNIfTI

Files in this package

oro.nifti/DESCRIPTION
oro.nifti/LICENSE
oro.nifti/NAMESPACE
oro.nifti/R
oro.nifti/R/afniS4.R oro.nifti/R/analyzeS4.R oro.nifti/R/auditTrail.R oro.nifti/R/convert_anlz.R oro.nifti/R/convert_nifti.R oro.nifti/R/hotmetal.R oro.nifti/R/miscellaneous.R oro.nifti/R/niftiS4.R oro.nifti/R/plot.R oro.nifti/R/readS4.R oro.nifti/R/remove.R oro.nifti/R/tim_colors.R oro.nifti/R/transform.R oro.nifti/R/wrappers.R oro.nifti/R/writeS4.R oro.nifti/R/zzz.R
oro.nifti/build
oro.nifti/build/vignette.rds
oro.nifti/demo
oro.nifti/demo/00Index
oro.nifti/demo/avg152T1.R
oro.nifti/demo/avg152T1LR.R
oro.nifti/demo/avg152T1RL.R
oro.nifti/demo/filtered_func_data.R
oro.nifti/inst
oro.nifti/inst/CITATION
oro.nifti/inst/afni
oro.nifti/inst/afni/ARzs_CW_avvr.DEL+orig.BRIK
oro.nifti/inst/afni/ARzs_CW_avvr.DEL+orig.HEAD
oro.nifti/inst/afni/TT_N27_EZ_LR+tlrc.BRIK.gz
oro.nifti/inst/afni/TT_N27_EZ_LR+tlrc.HEAD
oro.nifti/inst/anlz
oro.nifti/inst/anlz/avg152T1.hdr.gz
oro.nifti/inst/anlz/avg152T1.img.gz
oro.nifti/inst/doc
oro.nifti/inst/doc/ANALYZE75.pdf
oro.nifti/inst/doc/nifti.R
oro.nifti/inst/doc/nifti.Rnw
oro.nifti/inst/doc/nifti.pdf
oro.nifti/inst/nifti
oro.nifti/inst/nifti/filtered_func_data.nii.gz
oro.nifti/inst/nifti/mniLR.nii.gz
oro.nifti/inst/nifti/mniRL.nii.gz
oro.nifti/inst/nifti/zstat1.nii.gz
oro.nifti/man
oro.nifti/man/afni-class.Rd oro.nifti/man/afni.Rd oro.nifti/man/anlz-class.Rd oro.nifti/man/anlz.Rd oro.nifti/man/as_nifti.Rd oro.nifti/man/audit_trail-methods.Rd oro.nifti/man/audit_trail.Rd oro.nifti/man/aux_file-methods.Rd oro.nifti/man/bitwise.Rd oro.nifti/man/calmin-methods.Rd oro.nifti/man/coerce-methods.Rd oro.nifti/man/convert_afni.Rd oro.nifti/man/convert_anlz.Rd oro.nifti/man/convert_nifti.Rd oro.nifti/man/descrip-methods.Rd oro.nifti/man/hotmetal.Rd oro.nifti/man/image-methods.Rd oro.nifti/man/integerTranslation.Rd oro.nifti/man/miscellaneous.Rd oro.nifti/man/nifti-class.Rd oro.nifti/man/nifti.Rd oro.nifti/man/niftiAuditTrail-class.Rd oro.nifti/man/niftiExtension-class.Rd oro.nifti/man/niftiExtensionSection-class.Rd oro.nifti/man/nifti_assign-methods.Rd oro.nifti/man/orthographic-methods.Rd oro.nifti/man/overlay-methods.Rd oro.nifti/man/performPermutation.Rd oro.nifti/man/pixdim-methods.Rd oro.nifti/man/q2R.Rd oro.nifti/man/qformsform.Rd oro.nifti/man/read_afni.Rd oro.nifti/man/read_anlz.Rd oro.nifti/man/read_nifti.Rd oro.nifti/man/remove.Rd oro.nifti/man/reorient.Rd oro.nifti/man/tim_colors.Rd oro.nifti/man/transformCoordinate.Rd oro.nifti/man/write_afni.Rd oro.nifti/man/write_anlz.Rd oro.nifti/man/write_nifti.Rd
oro.nifti/tests
oro.nifti/tests/Examples
oro.nifti/tests/Examples/oro.nifti-Ex.Rout.save
oro.nifti/vignettes
oro.nifti/vignettes/nifti.Rnw
oro.nifti/vignettes/nifti.bib

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