afni-class: Class "afni"

Description

The AFNI class for medical imaging data.

Objects from the Class

Objects can be created by calls of the form new("afni", data, dim, dimnames, ...).

Slots

.Data:

Object of class "array" contains the imaging data

DATASET_RANK:

Object of class "integer"

DATASET_DIMENSIONS:

Object of class "integer"

TYPESTRING:

Object of class "character"

SCENE_DATA:

Object of class "integer"

ORIENT_SPECIFIC:

Object of class "integer"

ORIGIN:

Object of class "numeric"

DELTA:

Object of class "numeric"

TAXIS_NUMS:

Object of class "integer"

TAXIS_FLOATS:

Object of class "numeric"

TAXIS_OFFSETS:

Object of class "numeric"

IDCODE_STRING:

Object of class "character"

IDCODE_DATE:

Object of class "character"

BYTEORDER_STRING:

Object of class "character"

BRICK_STATS:

Object of class "numeric"

BRICK_TYPES:

Object of class "integer"

BRICK_FLOAT_FACS:

Object of class "numeric"

BRICK_LABS:

Object of class "character"

BRICK_STATAUX:

Object of class "numeric"

STAT_AUX:

Object of class "numeric"

HISTORY_NOTE:

Object of class "character"

NOTES_COUNT:

Object of class "integer"

NOTE_NUMBER:

Object of class "character"

TAGALIGN_MATVEC:

Object of class "numeric"

VOLREG_MATVEC:

Object of class "array"

VOLREG_ROTCOM:

Object of class "character"

VOLREG_CENTER_OLD:

Object of class "numeric"

VOLREG_CENTER_BASE:

Object of class "numeric"

VOLREG_ROTPARENT_IDCODE:

Object of class "character"

VOLREG_ROTPARENT_NAME:

Object of class "character"

VOLREG_GRIDPARENT_IDCODE:

Object of class "character"

VOLREG_GRIDPARENT_NAME:

Object of class "character"

VOLREG_INPUT_IDCODE:

Object of class "character"

VOLREG_INPUT_NAME:

Object of class "character"

VOLREG_BASE_IDCODE:

Object of class "character"

VOLREG_BASE_NAME:

Object of class "character"

VOLREG_ROTCOM_NUM:

Object of class "integer"

IDCODE_ANAT_PARENT:

Object of class "character"

TO3D_ZPAD:

Object of class "integer"

IDCODE_WARP_PARENT:

Object of class "character"

WARP_TYPE:

Object of class "integer"

WARP_DATA:

Object of class "numeric"

MARKS_XYZ:

Object of class "numeric"

MARKS_LAB:

Object of class "character"

MARKS_HELP:

Object of class "character"

MARKS_FLAGS:

Object of class "integer"

TAGSET_NUM:

Object of class "integer"

TAGSET_FLOATS:

Object of class "numeric"

TAGSET_LABELS:

Object of class "character"

LABEL_1:

Object of class "character"

LABEL_2:

Object of class "character"

DATASET_NAME:

Object of class "character"

DATASET_KEYWORDS:

Object of class "character"

BRICK_KEYWORDS:

Object of class "character"

Extends

Class "array", from data part.
Class "matrix", by class "array", distance 2, with explicit test and coerce.
Class "structure", by class "array", distance 2.
Class "vector", by class "array", distance 3, with explicit coerce.
Class "vector", by class "array", distance 5, with explicit test and coerce.

Methods

show

signature(object = "afni"): ...

writeAFNI

signature(nim = "afni"): ...

Author(s)

Karsten Tabelow karsten.tabelow@wias-berlin.de

References

AFNI
http://afni.nimh.nih.gov/pub/dist/src/README.attributes

See Also

nifti, anlz

Examples

1
showClass("afni")

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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