ouch: Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

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Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

Author
Aaron A. King <kingaa@umich.edu> and Marguerite A. Butler <mbutler@hawaii.edu>
Date of publication
2015-06-04 19:27:11
Maintainer
Aaron A. King <kingaa@umich.edu>
License
GPL(>= 2)
Version
2.9-1
URLs

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Man pages

anolis.ssd
Greater Antillean anolis lizard sexual size dimorphism data.
ape2ouch
Convert an "ape" tree to an "ouch" tree.
bimac
Anolis bimaculatus lizard size data.
brown
Fit a Brownian-motion model of evolution along a phylogenetic...
browntree-class
Fitted phylogenetic Brownian motion model
hansen
Hansen model of evolution along a phylogenetic tree
hansentree-class
hansen tree object
hansentree-methods
Methods of the "hansentree" class
ouch-package
Ornstein-Uhlenbeck methods for comparative phylogenetic...
ouchtree-class
Phylogenetic tree object in 'ouch' format.
paint
Painting selective regimes on a phylogenetic tree.

Files in this package

ouch/DESCRIPTION
ouch/NAMESPACE
ouch/R
ouch/R/ape2ouch.R
ouch/R/brown.R
ouch/R/glssoln.R
ouch/R/hansen.R
ouch/R/methods.R
ouch/R/ouchtree.R
ouch/R/paint.R
ouch/R/plot.R
ouch/R/rmvnorm.R
ouch/data
ouch/data/anolis.ssd.csv.gz
ouch/data/bimac.csv.gz
ouch/inst
ouch/inst/CITATION
ouch/inst/ChangeLog
ouch/inst/GPL
ouch/inst/NEWS
ouch/inst/NEWS.Rd
ouch/inst/OCHANGELOG
ouch/man
ouch/man/anolis.ssd.Rd
ouch/man/ape2ouch.Rd
ouch/man/bimac.Rd
ouch/man/brown.Rd
ouch/man/browntree-class.Rd
ouch/man/hansen.Rd
ouch/man/hansentree-class.Rd
ouch/man/hansentree-methods.Rd
ouch/man/ouch-package.Rd
ouch/man/ouchtree-class.Rd
ouch/man/paint.Rd
ouch/src
ouch/src/covar-matrix.c
ouch/src/ouch.h
ouch/src/weight-matrix.c
ouch/tests
ouch/tests/boot.R
ouch/tests/boot.Rout.save
ouch/tests/exacttree.R
ouch/tests/exacttree.Rout.save
ouch/tests/simtree.R
ouch/tests/simtree.Rout.save