ouch: Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

AuthorAaron A. King <kingaa@umich.edu> and Marguerite A. Butler <mbutler@hawaii.edu>
Date of publication2015-06-04 19:27:11
MaintainerAaron A. King <kingaa@umich.edu>
LicenseGPL(>= 2)
Version2.9-1
http://ouch.r-forge.r-project.org/

View on R-Forge

Functions

anolis.ssd Man page
ape2ouch Man page
as,hansentree-method Man page
bimac Man page
bootstrap Man page
bootstrap-browntree Man page
bootstrap,browntree-method Man page
bootstrap-hansentree Man page
bootstrap,hansentree-method Man page
brown Man page
browntree Man page
browntree-class Man page
coef-browntree Man page
coef,browntree-method Man page
coef-hansentree Man page
coef,hansentree-method Man page
coerce,browntree,data.frame-method Man page
coerce,hansentree,data.frame-method Man page
coerce,ouchtree,data.frame-method Man page
hansen Man page
hansentree Man page
hansentree-class Man page
hansentree-methods Man page
logLik-browntree Man page
logLik,browntree-method Man page
logLik-hansentree Man page
logLik,hansentree-method Man page
ouch-package Man page
ouchtree Man page
ouchtree-class Man page
paint Man page
plot-browntree Man page
plot,browntree-method Man page
plot-hansentree Man page
plot,hansentree-method Man page
plot-ouchtree Man page
plot,ouchtree-method Man page
print-browntree Man page
print,browntree-method Man page
print-hansentree Man page
print,hansentree-method Man page
print-ouchtree Man page
print,ouchtree-method Man page
show-browntree Man page
show,browntree-method Man page
show-hansentree Man page
show,hansentree-method Man page
show-ouchtree Man page
show,ouchtree-method Man page
simulate-browntree Man page
simulate,browntree-method Man page
simulate-hansentree Man page
simulate,hansentree-method Man page
summary-browntree Man page
summary,browntree-method Man page
summary-hansentree Man page
summary,hansentree-method Man page
update-browntree Man page
update,browntree-method Man page
update-hansentree Man page
update,hansentree-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/ape2ouch.R R/brown.R R/glssoln.R R/hansen.R R/methods.R R/ouchtree.R R/paint.R R/plot.R R/rmvnorm.R
data
data/anolis.ssd.csv.gz
data/bimac.csv.gz
inst
inst/CITATION
inst/ChangeLog
inst/GPL
inst/NEWS
inst/NEWS.Rd
inst/OCHANGELOG
man
man/anolis.ssd.Rd man/ape2ouch.Rd man/bimac.Rd man/brown.Rd man/browntree-class.Rd man/hansen.Rd man/hansentree-class.Rd man/hansentree-methods.Rd man/ouch-package.Rd man/ouchtree-class.Rd man/paint.Rd
src
src/covar-matrix.c
src/ouch.h
src/weight-matrix.c
tests
tests/boot.R
tests/boot.Rout.save
tests/exacttree.R
tests/exacttree.Rout.save
tests/simtree.R
tests/simtree.Rout.save

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