ouch-package: Ornstein-Uhlenbeck methods for comparative phylogenetic...
In ouch: Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
Description
Classes
Detailed Documentation
Author(s)
References
Description
The ouch package provides facilities for Ornstein-Uhlenbeck based methods of phylogenetic comparative analysis.
Classes
The basic class, ouchtree, is provided to encode a phylogenetic tree.
Plot and print methods are provided.
The class browntree derives from class ouchtree and encodes the results of fitting a Brownian Motion model to data.
The class hansentree derives from class ouchtree and encodes the results of fitting a Hansen model to data.
Detailed Documentation
- ouchtree
ouchtree
- Brownian motion methods
-
brown,
browntree-class
- Ornstein-Uhlenbeck methods
-
hansen,
hansentree-class
- simulate methods
-
simulate-browntree,
simulate-hansentree
- plot methods
-
plot-browntree,
plot-hansentree
ape2ouch-
Convert a tree in ape format to ouch format.
See ape2ouch
Author(s)
Aaron A. King (kingaa at umich dot edu)
References
Butler, M.A. and A.A. King (2004)
Phylogenetic comparative analysis: a modeling approach for adaptive evolution.
American Naturalist 164:683–695.
ouch documentation built on May 2, 2019, 6:53 p.m.
R Package Documentation
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Description Classes Detailed Documentation Author(s) References
Description
The ouch package provides facilities for Ornstein-Uhlenbeck based methods of phylogenetic comparative analysis.
Classes
The basic class, ouchtree, is provided to encode a phylogenetic tree.
Plot and print methods are provided.
The class browntree derives from class ouchtree and encodes the results of fitting a Brownian Motion model to data.
The class hansentree derives from class ouchtree and encodes the results of fitting a Hansen model to data.
Detailed Documentation
- ouchtree
ouchtree- Brownian motion methods
-
brown,browntree-class - Ornstein-Uhlenbeck methods
-
hansen,hansentree-class - simulate methods
-
simulate-browntree,simulate-hansentree - plot methods
-
plot-browntree,plot-hansentree ape2ouch-
Convert a tree in ape format to ouch format. See
ape2ouch
Author(s)
Aaron A. King (kingaa at umich dot edu)
References
Butler, M.A. and A.A. King (2004) Phylogenetic comparative analysis: a modeling approach for adaptive evolution. American Naturalist 164:683–695.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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