generate_masks: Generate binary masks from the results of a cluster analysis

In phenofun: Automated Processing of Webcam Images for Phenological Classification

Description

This function transforms the results of a cluster analysis in a set of binary masks (or ROIs).

Usage

generate_masks(settings, cluster_list, x = NULL, y = NULL, name_of_analysis,
  path_base, return_masks = TRUE, save_masks = TRUE, type = ".tiff")

Arguments

settings	A matrix containing the analysed settings. Preferably the output from find_clusters.
cluster_list	A list with the results of the cluster analysis. Preferably the output from find_clusters.
x	Vector of x-coordinates to read in. Default NULL results in a grid of all possible values.
y	Vector of y-coordinates to read in. Default NULL results in a grid of all possible values.
name_of_analysis	Name of the analysis (for file name of the results)
path_base	Base directory
return_masks	TRUE (default): Masks are returned as list.
save_masks	TRUE (default): Masks are saved as .RData and .tiff.
type	Type of saved images: .tiff, .jpeg, .jpg, .png, ..., everything possible in EBImage::writeImage, see ?EBImage::writeImage

Value

List of masks.

phenofun documentation built on Jan. 22, 2017, 9:01 p.m.