matrix2sample: Convert community data matrix to Phylocom sample
In picante: R tools for integrating phylogenies and ecology

Description Usage Arguments Value Author(s) References Examples

Converts a community data matrix to a Phylocom database-format community sample

1	matrix2sample(z)

`z`	Community data matrix

Phylocom database-format community sample

Steven Kembel <steve.kembel@gmail.com> and Cam Webb <cwebb@oeb.harvard.edu>

Webb, C.O., Ackerly, D.D., and Kembel, S.W. 2008. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Version 4.0.1. http://www.phylodiversity.net/phylocom/.

1 2	data(phylocom) matrix2sample(phylocom$sample)

Loading required package: ape
Loading required package: vegan
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-4
Loading required package: nlme
      plot abund   id
1   clump1     1  sp1
2   clump1     1  sp2
3   clump1     1  sp3
4   clump1     1  sp4
5   clump1     1  sp5
6   clump1     1  sp6
7   clump1     1  sp7
8   clump1     1  sp8
9  clump2a     1  sp1
10 clump2a     2 sp10
11 clump2a     2 sp11
12 clump2a     2 sp12
13 clump2a     1  sp2
14 clump2a     1  sp3
15 clump2a     1  sp4
16 clump2a     2  sp9
17 clump2b     1  sp1
18 clump2b     2 sp17
19 clump2b     2 sp18
20 clump2b     2 sp19
21 clump2b     1  sp2
22 clump2b     2 sp20
23 clump2b     1  sp3
24 clump2b     1  sp4
25  clump4     1  sp1
26  clump4     1 sp10
27  clump4     2 sp17
28  clump4     2 sp18
29  clump4     1  sp2
30  clump4     2 sp25
31  clump4     2 sp26
32  clump4     1  sp9
33    even     1  sp1
34    even     1 sp13
35    even     1 sp17
36    even     1 sp21
37    even     1 sp25
38    even     1 sp29
39    even     1  sp5
40    even     1  sp9
41  random     1 sp12
42  random     4 sp14
43  random     2 sp15
44  random     3 sp17
45  random     1  sp2
46  random     1 sp22
47  random     2 sp24
48  random     2  sp5